Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae35880470b0/fasta/6ae35880470b0_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           412758
Total number of identified SSRs:                 15
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
4	2
5	8
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AG	-	-	-	1	1
AT	-	-	-	1	1
CT	-	-	-	1	1
TC	-	-	-	1	1
CTAC	-	2			2
AAAGG	1				1
AATTA	1				1
AATTG	1				1
GCCCG	1				1
TAAGA	1				1
TGGAT	1				1
TTCTA	1				1
TTTGA	1				1
TTATTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AG/CT	-	-	-	3	3
AT/AT	-	-	-	1	1
ACCT/AGGT	-	2			2
AAAGG/CCTTT	1				1
AAATC/ATTTG	1				1
AAATT/AATTT	1				1
AAGAT/ATCTT	1				1
AATAG/ATTCT	1				1
AATCC/ATTGG	1				1
AATTC/AATTG	1				1
CCCGG/CCGGG	1				1
AAAAAT/ATTTTT	1				1
