Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae3379b9ca0c/fasta/6ae3379b9ca0c_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4662
Total size of examined sequences (bp):           122915671
Total number of identified SSRs:                 22457
Number of SSR containing sequences:              3954
Number of sequences containing more than 1 SSR:  3186
Number of SSRs present in compound formation:    912


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	67
2	7590
3	6194
4	3492
5	3900
6	1214

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	7	8	6	5	4		2	1														33
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																	1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	17	7	1	1	1	1	1		3		1											33
AC	-	-	-	270	136	52	32	15	13	8	3	2	1		2																								534
AG	-	-	-	714	392	192	101	65	35	20	14	9	4	3	2	4	1		1																				1557
AT	-	-	-	205	78	50	29	20	14	12	5	5	3			1				1																			423
CA	-	-	-	179	75	38	17	7	4	5	1	1																											327
CG	-	-	-	1	1																																		2
CT	-	-	-	288	195	104	37	22	10	6	3	3	2	1		1	1		2		1																		676
GA	-	-	-	455	207	121	45	28	17	11	9	2	3	1	2		2																						903
GT	-	-	-	130	80	34	18	7		3		1			1																								274
TA	-	-	-	184	66	47	19	16	9	8	5	3	2	1	2	1																							363
TC	-	-	-	904	499	238	121	55	39	24	15	12	5	5		3	1			2			1		1														1925
TG	-	-	-	341	138	57	37	16	5	3	4			1	1			1		2																			606
AAC	-	-	99	21	5	1																																	126
AAG	-	-	223	78	24	4	3	2	1																														335
AAT	-	-	211	57	19	8								1																									296
ACA	-	-	106	22	14	1	4																																147
ACC	-	-	2	1																																			3
ACG	-	-	8	5	1																																		14
ACT	-	-	10	3	1	1																																	15
AGA	-	-	77	20	8	5	1																																111
AGC	-	-	114	36	3	1	1																																155
AGG	-	-	6	2																																			8
AGT	-	-	8	1																																			9
ATA	-	-	82	31	8	3	1	1	1																														127
ATC	-	-	205	76	9	6	1		1																														298
ATG	-	-	229	103	21	6				1		1																											361
ATT	-	-	175	37	12	6	1	1																															232
CAA	-	-	131	35	12	1																																	179
CAC	-	-	5																																				5
CAG	-	-	128	33	5	3																																	169
CAT	-	-	189	76	25	7	1		1																														299
CCA	-	-	13	2																																			15
CCT	-	-	7		1																																		8
CGA	-	-	7																																				7
CGT	-	-	2	1																																			3
CTA	-	-	7	2																																			9
CTC	-	-	5	4	1																																		10
CTG	-	-	100	38	4	1																																	143
CTT	-	-	141	38	8	4				1																													192
GAA	-	-	112	33	12	3		2																															162
GAC	-	-	9	4	1																																		14
GAG	-	-	5	1																																			6
GAT	-	-	198	57	17	2																																	274
GCA	-	-	48	15	3																																		66
GCC	-	-	1																																				1
GCG	-	-	1																																				1
GCT	-	-	51	18	4																																		73
GGA	-	-	8	2																																			10
GGT	-	-	8	1																																			9
GTA	-	-	1			1																																	2
GTC	-	-	10	4	1	1																																	16
GTG	-	-	3																																				3
GTT	-	-	72	15	4				1																														92
TAA	-	-	99	31	13	4	4	1	1																														153
TAC	-	-	5	1																																			6
TAG	-	-	10	2																																			12
TAT	-	-	88	29	12	2	2	3																															136
TCA	-	-	276	99	21	9	3																																408
TCC	-	-	4	2																																			6
TCG	-	-	11	2	1																																		14
TCT	-	-	91	29	3	2																																	125
TGA	-	-	216	73	18	5	2	2		1																													317
TGC	-	-	140	37	7	1																																	185
TGG	-	-	9																																				9
TGT	-	-	114	31	6	4																																	155
TTA	-	-	131	48	17	5	3	1			2																												207
TTC	-	-	173	64	25	7	3																																272
TTG	-	-	134	31	14	5																																	184
AAAC	-	20	4																																				24
AAAG	-	69	19	1	1																																		90
AAAT	-	104	11																																				115
AACA	-	7	1	1																																			9
AACC	-	1																																					1
AACG	-	2																																					2
AACT	-	4																																					4
AAGA	-	50	7	1																																			58
AAGC	-	32	1																																				33
AAGG	-	8																																					8
AAGT	-	4	1																																				5
AATA	-	31	3	1																																			35
AATC	-	8		1																																			9
AATG	-	48	3		1																																		52
AATT	-	30	1	2																																			33
ACAA	-	23	1	2	1																																		27
ACAG	-	19	4	6	3		3	1	1																														37
ACAT	-	13	4	1	1	1	1	1																															22
ACCT	-	2																																					2
ACTA	-	3																																					3
ACTC	-	9	2																																				11
ACTG	-	4		1																																			5
ACTT	-	4																																					4
AGAA	-	79	14	2																																			95
AGAC	-	17	3																																				20
AGAT	-	7	4																																				11
AGCA	-	24	3																																				27
AGCC	-	34	10	11	5	1				1																												1	63
AGCG	-	1																																					1
AGGA	-	8																																					8
AGGC	-	6	3	1																																			10
AGGT	-	2	1																																				3
AGTA	-	6	1																																				7
AGTC	-	4	3	1																																			8
AGTG	-	17	4	1																																			22
AGTT	-	2																																					2
ATAA	-	30	2																																				32
ATAC	-	6	2	1																																			9
ATAG	-	8	1																																				9
ATCA	-	4																																					4
ATCC	-	6	2																																				8
ATCT	-	13	3	1																																			17
ATGA	-	37	5	1																																			43
ATGC	-	3																																					3
ATGG	-	2																																					2
ATGT	-	4	2	2			1																																9
ATTA	-	16	1																																				17
ATTC	-	31	4																																				35
ATTG	-	6																																					6
ATTT	-	73	4																																				77
CAAA	-	2	1																																				3
CAAG	-	13	2																																				15
CAAT	-	4	1																																				5
CACT	-	6	2																																				8
CAGA	-	1	1																																				2
CAGC	-	106	37	19	9	1	2							1					1																				176
CAGG	-	2																																					2
CAGT	-	3	1																																				4
CATA	-	8	1																																				9
CATC	-	6	2																																				8
CATG	-	25	1																																				26
CATT	-	21	5																																				26
CCAA	-	1	1																																				2
CCAG	-	48	34	32	8	3		1	1													1																	128
CCAT	-	1																																					1
CCTG	-	3																																					3
CCTT	-	1																																					1
CGAG	-	1																																					1
CGAT	-	1																																					1
CGCT	-	1																																					1
CGGA	-	4	1	1																																			6
CGTA	-	1																																					1
CGTT	-	1																																					1
CTAC	-	1																																					1
CTAG	-	1																																					1
CTAT	-	3																																					3
CTCA	-	22	1																																				23
CTCG	-	2																																					2
CTGA	-	3																																					3
CTGC	-	8	3	1																																			12
CTGG	-	9	3	2	1																																		15
CTGT	-	3																																					3
CTTA	-	5	1																																				6
CTTC	-	3	1																																				4
CTTG	-	16	2																																				18
CTTT	-	32	9																																				41
GAAA	-	53	9	1																																			63
GAAC	-	1																																					1
GAAG	-	4	2																																				6
GAAT	-	29	7																																				36
GACA	-	2	2	3	2	3																																	12
GACG	-	3	1																																				4
GACT	-	1																																					1
GAGG	-	1																																					1
GAGT	-	20	2	1																																			23
GATA	-	6	1			1																																	8
GATC	-		1																																				1
GATG	-	9	1																																				10
GATT	-	3	2																																				5
GCAA	-	22	3																																				25
GCAG	-	4	1																																				5
GCAT	-	22	2																																				24
GCCA	-	13	1	1																																			15
GCCT	-	1	1																																				2
GCGA	-	2																																					2
GCTA	-	2																																					2
GCTG	-	11	4				1																																16
GCTT	-	12	5																																				17
GGAA	-	2																																					2
GGAT	-	2																																					2
GGCA	-		1																																				1
GGCT	-	57	25	12	3		2	1	2	1																													103
GGTA	-	2																																					2
GGTT	-	1																																					1
GTAA	-	4																																					4
GTAC	-	1																																					1
GTAT	-	4		1																																			5
GTCA	-	2																																					2
GTCC	-	7	2		1																																		10
GTCG	-	1																																					1
GTCT	-	11	2	1																																			14
GTGA	-	6																																					6
GTGC	-	1																																					1
GTTA	-	1																																					1
GTTG	-	1																																					1
GTTT	-	8	1	1																																			10
TAAA	-	47	4	1																																			52
TAAC	-	2																																					2
TAAG	-	9	1																																				10
TAAT	-	20	3	1																																			24
TACA	-	6	3	2																																			11
TACC	-	1																																					1
TACT	-	5																																					5
TAGA	-	13	1																																				14
TAGC	-	2																																					2
TAGG	-	1																																					1
TAGT	-		1																																				1
TATC	-	15	3	1																																			19
TATG	-	7	3	1	2	1	1					1																											16
TATT	-	28	4	1																																			33
TCAA	-	6	2																																				8
TCAC	-	12	1																																				13
TCAG	-	3																																					3
TCAT	-	28	8	1	1																																		38
TCCA	-	2	1																																				3
TCCT	-	3	1																																				4
TCGA	-	1																																					1
TCGC	-	1																																					1
TCGT	-	2																																					2
TCTA	-	10																																					10
TCTG	-	2	1																																				3
TCTT	-	45	8	1	1																																		55
TGAA	-	37	11																																				48
TGAC	-	4	1	1																																			6
TGAG	-	19	4																																				23
TGAT	-	4																																					4
TGCA	-	1																																					1
TGCC	-	5	1																																				6
TGCT	-	23	4	1																																			28
TGGA	-	3																																					3
TGGC	-	145	76	42	11	8	3	3	1					1																									290
TGTA	-	14	1	1				1																															17
TGTC	-	20	9	12	6	3	2			1																													53
TGTT	-	24	6	3																																			33
TTAA	-	44	2	1																																			47
TTAC	-	7																																					7
TTAG	-	1																																					1
TTAT	-	31	1	1																																			33
TTCA	-	53	8	1																																			62
TTCC	-	8	2																																				10
TTCT	-	40	7	1		1																																	49
TTGA	-	4																																					4
TTGC	-	35	7																																				42
TTGG	-	1																																					1
TTGT	-	8	1																																				9
TTTA	-	59	6	1																																			66
TTTC	-	125	26	3																																			154
TTTG	-	15	3																																				18
AAAAC	17	2																																					19
AAAAG	49	5																																					54
AAAAT	199	9	1																																				209
AAACA	15	1																																					16
AAACC	1																																						1
AAACG	1																																						1
AAACT	5																																						5
AAAGA	40	3																																					43
AAAGC	6																																						6
AAAGG	4																																						4
AAAGT	6	2																																					8
AAATA	78	2																																					80
AAATC	14	2																																					16
AAATG	30	3	1																																				34
AAATT	145	5																																					150
AACAA	11																																						11
AACAG	2																																						2
AACAT	2																																						2
AACCA	1																																						1
AACGA	1																																						1
AACGG	2																																						2
AACTA	6																																						6
AACTC	3																																						3
AACTG	2																																						2
AACTT	1																																						1
AAGAA	40	3																																					43
AAGAC	1																																						1
AAGAG	17																																						17
AAGAT	2																																						2
AAGCA	2																																						2
AAGCT	1																																						1
AAGGA	1																																						1
AAGGC	2																																						2
AAGTA	2																																						2
AAGTC	5	2	1																																				8
AAGTG	4	1																																					5
AAGTT	2																																						2
AATAA	78	6	1																																				85
AATAC	4																																						4
AATAG	6																																						6
AATAT	11																																						11
AATCA	4	1																																					5
AATCC	2																																						2
AATGA	20																																						20
AATGC	6																																						6
AATGG	1																																						1
AATGT	4																																						4
AATTA	52	2																																					54
AATTC	18	1																																					19
AATTG	24	1																																					25
AATTT	148	5																																					153
ACAAA	13		1																																				14
ACAAC	3																																						3
ACAAG	1																																						1
ACAAT	2				1																																		3
ACACA	1																																						1
ACAGC	1																																						1
ACATA	2																																						2
ACATC	3																																						3
ACATT	1																																						1
ACCAA	1																																						1
ACCAG	1																																						1
ACTAA	2																																						2
ACTCA	2																																						2
ACTCG	1																																						1
ACTCT	2																																						2
ACTTG	14	1	1																																				16
ACTTT	5																																						5
AGAAA	46	2																																					48
AGAAC	2																																						2
AGAAG	5																																						5
AGAAT	8	1																																					9
AGACA	3																																						3
AGAGA	14																																						14
AGAGC	2																																						2
AGAGT	2																																						2
AGATT	2																																						2
AGCAA	1																																						1
AGCAC	2																																						2
AGCAT	1																																						1
AGCTG	1																																						1
AGTAA	1																																						1
AGTAG	1																																						1
AGTAT	1																																						1
AGTCA	2																																						2
AGTGA	1	1																																					2
AGTTC	1																																						1
AGTTG	2	1																																					3
AGTTT	2	1																																					3
ATAAA	76	3	1																																				80
ATAAC	1																																						1
ATAAT	19																																						19
ATACG	1																																						1
ATAGA	1	1																																					2
ATATA	3	1																																					4
ATATG	5																																						5
ATATT	4																																						4
ATCAA	3																																						3
ATCAC	2																																						2
ATCAT	4																																						4
ATCCA	1																																						1
ATCGT	1																																						1
ATCTA	2																																						2
ATCTC	8	1																																					9
ATCTT	2																																						2
ATGAA	21	1																																					22
ATGAC	1																																						1
ATGAG	4																																						4
ATGAT	3																																						3
ATGCA	2																																						2
ATGCC	2																																						2
ATGTA	4																																						4
ATGTG	1																																						1
ATGTT	3																																						3
ATTAA	30	3																																					33
ATTAC	6																																						6
ATTAG	1																																						1
ATTAT	10																																						10
ATTCA	12																																						12
ATTCC		1																																					1
ATTCT	3																																						3
ATTGA	9	2																																					11
ATTGC	2																																						2
ATTGT	3																																						3
ATTTA	47	3																																					50
ATTTC	52	1		1																																			54
ATTTG	12																																						12
ATTTT	202	6	1																																				209
CAAAA	26	1																																					27
CAAAG	2																																						2
CAAAT	3																																						3
CAACA	1																																						1
CAACT	2																																						2
CAAGC	1																																						1
CAAGT	5	2																																					7
CAATG	3																																						3
CAATT	9																																						9
CACAA	1																																						1
CACAG	1																																						1
CACAT	1																																						1
CACTT	3																																						3
CAGTT	2																																						2
CATAA	1																																						1
CATAG	2																																						2
CATAT	1																																						1
CATCA	3																																						3
CATCT	3																																						3
CATGA	2																																						2
CATGC	1																																						1
CATGG	1																																						1
CATGT	1																																						1
CATTA	2																																						2
CATTC	3																																						3
CATTG	1																																						1
CATTT	18	1																																					19
CCAAA	1																																						1
CCATT	2																																						2
CCGTT	2																																						2
CGAAT	1																																						1
CGAGT	1																																						1
CGATA	1																																						1
CGGGA	11																																						11
CGTGT	1																																						1
CTAAA	2																																						2
CTATT	3																																						3
CTCAA	2																																						2
CTCAC	1																																						1
CTCAT	3	1																																					4
CTCTA	3																																						3
CTCTC	4																																						4
CTCTG	1																																						1
CTCTT	2																																						2
CTGAT	1																																						1
CTGTT	3																																						3
CTTAA	1																																						1
CTTCA	4																																						4
CTTCG	1																																						1
CTTCT	7	1																																					8
CTTGA		1																																					1
CTTGT	1																																						1
CTTTA	2																																						2
CTTTC	4																																						4
CTTTG	8																																						8
CTTTT	24	2																																					26
GAAAA	41	7																																					48
GAAAC	1																																						1
GAAAG	1	1																																					2
GAAAT	30	3																																					33
GAACT	1																																						1
GAAGA	3		1																																				4
GAAGG	1																																						1
GAATA	3	3																																					6
GAATG	3																																						3
GAATT	13																																						13
GACAA	1																																						1
GACAT	2																																						2
GACGG	1																																						1
GACTC	1																																						1
GACTT	3																																						3
GAGAA	7																																						7
GAGAC	1																																						1
GAGAG	1																																						1
GAGAT	4																																						4
GAGCT	1																																						1
GAGGA	1																																						1
GAGTA	1																																						1
GAGTC	2																																						2
GAGTT	3																																						3
GATAA	6																																						6
GATAT	1																																						1
GATCT	1																																						1
GATGA	1																																						1
GATGT	3																																						3
GATTT	5	1																																					6
GCAAA	1	1																																					2
GCAAG	1																																						1
GCACA	2																																						2
GCACT	1																																						1
GCAGA	1																																						1
GCATT	1																																						1
GCTAT	1																																						1
GCTCA	1																																						1
GCTTG		1																																					1
GCTTT	1																																						1
GGAAA	1	1																																					2
GGAAT	2																																						2
GGATT	1																																						1
GTAAA	3																																						3
GTAGA	1																																						1
GTATA	1																																						1
GTATG	1																																						1
GTCAA	3																																						3
GTCAG	1																																						1
GTGAA	2																																						2
GTGCA	1																																						1
GTGTA	1																																						1
GTTGT	2																																						2
GTTTA	2																																						2
GTTTG	1																																						1
GTTTT	8																																						8
TAAAA	97	7																																					104
TAAAC	2																																						2
TAAAG	1																																						1
TAAAT	42	6		1																																			49
TAACT	2																																						2
TAAGA	1																																						1
TAATA	6	1																																					7
TAATC			1																																				1
TAATG	1																																						1
TAATT	43	1																																					44
TACAA	5																																						5
TACAT	2																																						2
TACCT	1																																						1
TACTA	2																																						2
TACTC	2																																						2
TAGAA	7	1																																					8
TAGAT	2																																						2
TAGCA	1																																						1
TAGTC	1																																						1
TAGTT	1																																						1
TATAA	9	1																																					10
TATAG	2																																						2
TATAT	9	1																																					10
TATCA	2																																						2
TATCT	2																																						2
TATGA	2	1																																					3
TATGT	2																																						2
TATTA	9	2																																					11
TATTC	12	2																																					14
TATTG	1																																						1
TATTT	60	3																																					63
TCAAA	8																																						8
TCAAC	1																																						1
TCAAG		1																																					1
TCAAT	8																																						8
TCACA	2																																						2
TCACT	2																																						2
TCATA	4	1																																					5
TCATC	6																																						6
TCATG	1																																						1
TCATT	18	1																																					19
TCCAA	1																																						1
TCCCG	7	1																																					8
TCCTC	2																																						2
TCCTT	3																																						3
TCGAA		1																																					1
TCGAT	1																																						1
TCGTC	2																																						2
TCTAA	1																																						1
TCTAC	1																																						1
TCTAT	4	2																																					6
TCTCA	1																																						1
TCTCC	1																																						1
TCTCG	2																																						2
TCTCT	12	2																																					14
TCTTA	2	1																																					3
TCTTC	17	3																																					20
TCTTG	2																																						2
TCTTT	28					1																																	29
TGAAA	43	2																																					45
TGAAC	3		1																																				4
TGAAG	2																																						2
TGAAT	14																																						14
TGACA	2																																						2
TGACT	1		1																																				2
TGAGA	1																																						1
TGAGC	1																																						1
TGAGT	3																																						3
TGATA	1																																						1
TGATC	1																																						1
TGATG	1																																						1
TGATT	3	1																																					4
TGCAA	3																																						3
TGCAT	2																																						2
TGCCA			1																																				1
TGCCT	1																																						1
TGCGA	1																																						1
TGCTG	1																																						1
TGCTT	3																																						3
TGGAA	1																																						1
TGGAT	1																																						1
TGGCA	2																																						2
TGTAA	4																																						4
TGTAT	1																																						1
TGTCA	1																																						1
TGTCG	1																																						1
TGTCT	1		1																																				2
TGTGA	1																																						1
TGTGC	1																																						1
TGTGT	1																																						1
TGTTA	2																																						2
TGTTC	2																																						2
TGTTG	2																																						2
TGTTT	5																																						5
TTAAA	66	7																																					73
TTAAC	1																																						1
TTAAG	2																																						2
TTAAT	40	3																																					43
TTACA	2																																						2
TTACT	2																																						2
TTAGT	2																																						2
TTATA	12																																						12
TTATC	10	1																																					11
TTATG	1																																						1
TTATT	56	5																																					61
TTCAA	19	1																																					20
TTCAC	5																																						5
TTCAT	17	2																																					19
TTCCA	2																																						2
TTCCT	1																																						1
TTCGT	1																																						1
TTCTA	2																																						2
TTCTC	18	1																																					19
TTCTG	1																																						1
TTCTT	33	1																																					34
TTGAA	15	1																																					16
TTGAC	3																																						3
TTGAG	2																																						2
TTGAT	8																																						8
TTGCA	1																																						1
TTGCC		1																																					1
TTGCT	2																																						2
TTGGA	2																																						2
TTGTA	2																																						2
TTGTG	1																																						1
TTGTT	11																																						11
TTTAA	63	2																																					65
TTTAC	1	1																																					2
TTTAG	7																																						7
TTTAT	70	3																																					73
TTTCA	40	2																																					42
TTTCC	2																																						2
TTTCT	51	4																																					55
TTTGA	10	2																																					12
TTTGC	10																																						10
TTTGG	1	1																																					2
TTTGT	19																																						19
TTTTA	153	7																																					160
TTTTC	102	4	1																																				107
TTTTG	31	1	1																																				33
AAAAAC	2																																						2
AAAAAG	5																																						5
AAAAAT	15																																						15
AAAACA	1																																						1
AAAACT	3																																						3
AAAAGA	6																																						6
AAAATA	11																																						11
AAAATG	2																																						2
AAAATT	10	1																																					11
AAACAC	2																																						2
AAAGAA	17																																						17
AAAGAG	7																																						7
AAAGAT	1																																						1
AAAGTA	1																																						1
AAATAA	5																																						5
AAATAG	3	2																																					5
AAATAT	3																																						3
AAATCA	1																																						1
AAATGA	7																																						7
AAATGC	1																																						1
AAATGG	1																																						1
AAATTA	1																																						1
AAATTG	7																																						7
AAATTT	22	1																																					23
AACAGC	1																																						1
AACAGT	1																																						1
AACATA	1																																						1
AACATC	1																																						1
AACATG	1																																						1
AACGAC	1																																						1
AACGGG	6	2																																					8
AACTCA	1																																						1
AACTTG	3																																						3
AAGAAA	6																																						6
AAGAGA	2	1																																					3
AAGATC	13																																						13
AAGGAT	1																																						1
AAGTGA	1																																						1
AAGTTC	1																																						1
AAGTTG	1																																						1
AATAAA	6																																						6
AATAAG	1																																						1
AATATA	1																																						1
AATATG	1																																						1
AATCAT	1																																						1
AATGAA	1																																						1
AATGAG	1																																						1
AATGGG	1																																						1
AATTAA	3																																						3
AATTAG	1																																						1
AATTCA	13																																						13
AATTGA	2																																						2
AATTGG	2																																						2
AATTTA	3																																						3
AATTTC	1																																						1
AATTTG	6																																						6
AATTTT	9																																						9
ACAAAT	4																																						4
ACAACC	1																																						1
ACAATA	3																																						3
ACAGCA	1																																						1
ACATAC		1																																					1
ACATCA		1																																					1
ACATGT	7																																						7
ACATTT	1																																						1
ACCATC	1																																						1
ACCGTT	1																																						1
ACTAAT	1																																						1
ACTATT	1																																						1
ACTTGA	2																																						2
ACTTTT	1																																						1
AGAAAA	7																																						7
AGAAAG	5																																						5
AGAAAT	2	1																																					3
AGAACG	1																																						1
AGAGAA	12	1																																					13
AGATAT	1																																						1
AGATCA	1	1																																					2
AGATCT	1																																						1
AGATTA	1																																						1
AGCAAA	1																																						1
AGCAAG	1																																						1
AGCAGT	2																																						2
AGGAGA	2																																						2
AGGTAG	1																																						1
AGTAAT	1																																						1
AGTAGA	1																																						1
AGTAGC	2																																						2
AGTATT	1																																						1
AGTTTT	2																																						2
ATAAAA	11																																						11
ATAAAT	1																																						1
ATAACA	1																																						1
ATAATT	2																																						2
ATAGAA	1																																						1
ATAGAC	1																																						1
ATAGTC	1																																						1
ATATAA	1																																						1
ATATCA	1																																						1
ATCAAG	1																																						1
ATCAAT	1																																						1
ATCAGC	1																																						1
ATCAGG	2																																						2
ATCCAA	1																																						1
ATCCCG	7	2																																					9
ATCGGG	1	1																																					2
ATCTAA	1																																						1
ATCTTG	2																																						2
ATGAAA	2																																						2
ATGACC	1																																						1
ATGAGT	1																																						1
ATGTAC	2																																						2
ATGTCT	1																																						1
ATGTGA	1																																						1
ATGTGT	1																																						1
ATGTTT	2																																						2
ATTAAA	2																																						2
ATTATC	1																																						1
ATTCAT	1																																						1
ATTCTC	3	1																																					4
ATTGAA	2																																						2
ATTGCC	2																																						2
ATTGCT	1																																						1
ATTTAA	5																																						5
ATTTAC	1																																						1
ATTTAG	1																																						1
ATTTCA	3																																						3
ATTTCC	2																																						2
ATTTCT	3																																						3
ATTTGA	1																																						1
ATTTGT	2	1																																					3
ATTTTA	4																																						4
ATTTTC	5																																						5
ATTTTT	18	1																																					19
CAAAAA	1																																						1
CAAAAG	1																																						1
CAAAAT	1																																						1
CAAATT	2																																						2
CAACAG	7																																						7
CAACAT	1																																						1
CAATAA	1																																						1
CACAGA	1																																						1
CAGACA	1																																						1
CAGCAA	2																																						2
CAGCTT	1																																						1
CATAAG	1																																						1
CATACA	1																																						1
CATCAA		1																																					1
CATCGT	1																																						1
CATCTT		1																																					1
CATGTA	1																																						1
CATTTG	3																																						3
CCATGA	2																																						2
CCCGTT	1																																						1
CCGTTC	2																																						2
CCTCAC	1																																						1
CGACAA	1																																						1
CGACGT	1																																						1
CGAGAA	10	3	1																																				14
CGATGA	2																																						2
CGATGC	1																																						1
CGGGAA	66	43	8			1																																	118
CGTCAT	1																																						1
CGTTCA		1																																					1
CGTTCC	4																																						4
CGTTCT	1																																						1
CTACAA	1																																						1
CTCATC	1																																						1
CTCATT	1																																						1
CTCTCG	1																																						1
CTCTTG	1																																						1
CTCTTT	3																																						3
CTGCCG	1																																						1
CTGCTA	1																																						1
CTGCTT	2																																						2
CTTCAT	1																																						1
CTTGCA	1																																						1
CTTTAC	1																																						1
CTTTAT	1																																						1
CTTTCT	3																																						3
CTTTTA	1																																						1
CTTTTT	7																																						7
GAAAAA	9																																						9
GAAAAG	1																																						1
GAAAAT	2																																						2
GAAACA	2																																						2
GAAAGA	3																																						3
GAAATT	3																																						3
GAACGG	1	1																																					2
GAAGGA	1																																						1
GAATCA	1																																						1
GAATCT	1																																						1
GAGAAA	3																																						3
GAGAAT	1																																						1
GAGCAA	2																																						2
GATAAA	1																																						1
GATCAT	1																																						1
GATGAA	3	1																																					4
GATTCT	1																																						1
GATTGT	1																																						1
GATTTT	1																																						1
GCAAAA	1																																						1
GCAACA	1																																						1
GCAGCT	1																																						1
GCCTTT	1																																						1
GCTACT	2																																						2
GCTCCT	1																																						1
GCTGTT	1																																						1
GCTTCA	2																																						2
GCTTCT	1																																						1
GGAAAA	1																																						1
GGACAA	1																																						1
GGAGAA	1																																						1
GGATTA	1																																						1
GGGAAC	2																																						2
GTACAT	2																																						2
GTAGTT	2	1																																					3
GTCATT	1																																						1
GTGAAT		1																																					1
GTGGAA	1																																						1
GTGGCA	1																																						1
GTGTAT	1																																						1
GTTAGT	1																																						1
GTTATT	1																																						1
GTTCCC	2																																						2
GTTGAA	1																																						1
GTTGCT	2																																						2
GTTGTA	1																																						1
GTTGTC	1																																						1
TAAAAA	8																																						8
TAAAAC	2																																						2
TAAAAG	3																																						3
TAAAAT	3																																						3
TAAACA	1																																						1
TAAACT		2																																					2
TAAATA	1																																						1
TAAATG	1																																						1
TAAATT	8		1																																				9
TAACAA	1																																						1
TAACAG	1																																						1
TAAGAA	2																																						2
TAAGAT	2																																						2
TAAGTT	1		1																																				2
TAATCT	1																																						1
TAATTT	4		1																																				5
TACATG	1																																						1
TACTGC	1																																						1
TAGAAA	2																																						2
TAGCAG	1																																						1
TAGTGC	1																																						1
TATATT	1																																						1
TATGTA	1																																						1
TATGTG	1																																						1
TATTAA	1																																						1
TATTCT	1																																						1
TATTTC	2																																						2
TATTTG	1																																						1
TATTTT	4	1																																					5
TCAAAT	1	1																																					2
TCAAGT	1																																						1
TCAATT	1																																						1
TCACAC	1																																						1
TCACTC	1																																						1
TCATCT	2																																						2
TCATGG	1																																						1
TCATTT	1																																						1
TCCATG	1																																						1
TCCATT	1																																						1
TCCCGA	2																																						2
TCCCGT	1																																						1
TCGATC	2																																						2
TCGGGA	2	2																																					4
TCGTCC	1																																						1
TCTACA	1																																						1
TCTATT	2																																						2
TCTCGT		1																																					1
TCTCTG	1																																						1
TCTCTT	6																																						6
TCTGCT	1																																						1
TCTGTG	1																																						1
TCTTCA	3	1																																					4
TCTTTC	7	1																																					8
TCTTTT	5																																						5
TGAAAA	5	1																																					6
TGAAAC	1																																						1
TGAACA		1																																					1
TGAACT	1																																						1
TGAATG	1																																						1
TGAGAA	10	1																																					11
TGAGGA	1																																						1
TGATCG	1																																						1
TGATCT		1																																					1
TGATTC	1																																						1
TGCTAC	1																																						1
TGCTCT	1																																						1
TGCTGT	9																																						9
TGCTTC	2																																						2
TGCTTG	1																																						1
TGCTTT	1																																						1
TGTACA	4																																						4
TGTAGT	2																																						2
TGTATT	1																																						1
TGTCGT	1																																						1
TGTCTG	1																																						1
TGTGCG	1																																						1
TGTGTA	2																																						2
TGTGTC	1																																						1
TGTTCC				1																																			1
TGTTGA	1																																						1
TGTTGC	4																																						4
TGTTTA	2	1																																					3
TGTTTC	1																																						1
TGTTTT	2																																						2
TTAAAA	6																																						6
TTAAAT	4																																						4
TTAAGT	1																																						1
TTAATT	3																																						3
TTACTG	1																																						1
TTATAT	2																																						2
TTATCA	1																																						1
TTATCC	1																																						1
TTATTC	1																																						1
TTATTG	1																																						1
TTATTT	3																																						3
TTCAAA	5																																						5
TTCAAT		1																																					1
TTCATA	1																																						1
TTCATC	1																																						1
TTCATT	1																																						1
TTCCCG	65	54	5		1																																		125
TTCCTC	1																																						1
TTCTAA	1																																						1
TTCTCA	2																																						2
TTCTCG	12	1	1																																				14
TTCTCT	6																																						6
TTCTGA	1																																						1
TTCTGC	1																																						1
TTCTGT	1																																						1
TTCTTT	3																																						3
TTGAAA	2																																						2
TTGAAC	3																																						3
TTGAAG	1																																						1
TTGAAT	2																																						2
TTGATA	1																																						1
TTGATC	6																																						6
TTGCTG	2																																						2
TTGTCT	1																																						1
TTGTTA	2																																						2
TTGTTT	1																																						1
TTTAAA	13																																						13
TTTAAG	2																																						2
TTTAAT	4																																						4
TTTACA	1																																						1
TTTAGT	2																																						2
TTTATA	2																																						2
TTTATT	8	1																																					9
TTTCAA	2																																						2
TTTCAC	1																																						1
TTTCAT	2																																						2
TTTCCA	2																																						2
TTTCTA	1		1																																				2
TTTCTC	6	1																																					7
TTTCTT	5																																						5
TTTGAA	4																																						4
TTTGAT	1																																						1
TTTGCT	1																																						1
TTTGTT	3																																						3
TTTTAA	5																																						5
TTTTAG	2																																						2
TTTTAT	8																																						8
TTTTCA	8	1																																					9
TTTTCC	1																																						1
TTTTCG	1																																						1
TTTTCT	8		1																																				9
TTTTGA	3																																						3
TTTTGT	1																																						1
TTTTTA	11																																						11
TTTTTC	9																																						9
TTTTTG	2																																						2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	24	15	7	6	5	1	3	1	3		1											66
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																	1
AC/GT	-	-	-	920	429	181	104	45	22	19	8	4	1	1	4			1		2																			1741
AG/CT	-	-	-	2361	1293	655	304	170	101	61	41	26	14	10	4	8	5		3	2	1		1		1														5061
AT/AT	-	-	-	389	144	97	48	36	23	20	10	8	5	1	2	2				1																			786
CG/CG	-	-	-	1	1																																		2
AAC/GTT	-	-	656	155	55	12	4		1																														883
AAG/CTT	-	-	817	262	80	25	7	4	1	1																													1197
AAT/ATT	-	-	786	233	81	28	11	7	2		2			1																									1151
ACC/GGT	-	-	40	4																																			44
ACG/CGT	-	-	47	16	4	1																																	68
ACT/AGT	-	-	41	9	1	2																																	53
AGC/CTG	-	-	581	177	26	6	1																																791
AGG/CCT	-	-	35	11	2																																		48
ATC/ATG	-	-	1313	484	111	35	7	2	2	2		1																											1957
CCG/CGG	-	-	2																																				2
AAAC/GTTT	-	107	18	7	1																																		133
AAAG/CTTT	-	493	99	10	2	1																																	605
AAAT/ATTT	-	403	35	5																																			443
AACC/GGTT	-	5	1																																				6
AACG/CGTT	-	6																																					6
AACT/AGTT	-	13	1																																				14
AAGC/CTTG	-	177	27	1																																			205
AAGG/CCTT	-	37	6																																				43
AAGT/ACTT	-	44	4																																				48
AATC/ATTG	-	39	5	1																																			45
AATG/ATTC	-	284	51	3	2																																		340
AATT/AATT	-	110	7	4																																			121
ACAG/CTGT	-	75	22	22	11	6	5	1	1	1																													144
ACAT/ATGT	-	62	16	9	3	2	3	2				1																											98
ACCG/CGGT	-	1																																					1
ACCT/AGGT	-	9	1																																				10
ACGC/CGTG	-	1																																					1
ACGG/CCGT	-	14	4	1	1																																		20
ACGT/ACGT	-	2																																					2
ACTC/AGTG	-	111	16	2																																			129
ACTG/AGTC	-	24	5	3																																			32
AGAT/ATCT	-	75	13	2		1																																	91
AGCC/CTGG	-	423	190	119	37	13	8	5	4	2				2					1			1																1	806
AGCG/CGCT	-	8																																					8
AGCT/AGCT	-	5																																					5
AGGC/CCTG	-	29	10	2																																			41
AGGG/CCCT	-	1																																					1
ATCC/ATGG	-	31	6																																				37
ATCG/ATCG	-	2	1																																				3
ATGC/ATGC	-	51	3																																				54
AAAAC/GTTTT	156	5	2																																				163
AAAAG/CTTTT	454	31	1			1																																	487
AAAAT/ATTTT	1069	51	4																																				1124
AAACC/GGTTT	6	1																																					7
AAACG/CGTTT	4																																						4
AAACT/AGTTT	31	1																																					32
AAAGC/CTTTG	36	1																																					37
AAAGG/CCTTT	17	2																																					19
AAAGT/ACTTT	23	3																																					26
AAATC/ATTTG	70	7																																					77
AAATG/ATTTC	289	16	1	1																																			307
AAATT/AATTT	676	37		1																																			714
AACAC/GTGTT	12																																						12
AACAG/CTGTT	10																																						10
AACAT/ATGTT	14																																						14
AACGG/CCGTT	4																																						4
AACTC/AGTTG	20	1																																					21
AACTG/AGTTC	9		1																																				10
AACTT/AAGTT	9																																						9
AAGAC/CTTGT	10		1																																				11
AAGAG/CTCTT	102	7	1																																				110
AAGAT/ATCTT	25	2																																					27
AAGCC/CTTGG	1	1																																					2
AAGCG/CGCTT	1																																						1
AAGCT/AGCTT	1																																						1
AAGGC/CCTTG	4	1																																					5
AAGGG/CCCTT	1																																						1
AAGGT/ACCTT	1																																						1
AAGTC/ACTTG	36	7	3																																				46
AAGTG/ACTTC	23	2																																					25
AATAC/ATTGT	18				1																																		19
AATAG/ATTCT	49	10																																					59
AATAT/ATATT	92	6																																					98
AATCC/ATTGG	8																																						8
AATCG/ATTCG	2	1																																					3
AATCT/AGATT	8		1																																				9
AATGC/ATTGC	21																																						21
AATGG/ATTCC	14	1																																					15
AATGT/ACATT	26																																						26
AATTC/AATTG	141	6																																					147
ACACG/CGTGT	2																																						2
ACACT/AGTGT	1																																						1
ACAGC/CTGTG	8																																						8
ACATC/ATGTG	17																																						17
ACATG/ATGTC	10																																						10
ACCAG/CTGGT	1																																						1
ACCAT/ATGGT	1																																						1
ACCTC/AGGTG	1																																						1
ACCTG/AGGTC	1																																						1
ACGAG/CGTCT	5																																						5
ACGAT/ATCGT	3																																						3
ACGGG/CCCGT	19	1																																					20
ACTAG/AGTCT	1																																						1
ACTAT/AGTAT	6																																						6
ACTCG/AGTCG	5																																						5
ACTCT/AGAGT	13																																						13
ACTGC/AGTGC	2																																						2
AGAGC/CTCTG	4																																						4
AGAGG/CCTCT	9																																						9
AGATC/ATCTG	3																																						3
AGATG/ATCTC	31	2																																					33
AGCAT/ATGCT	5																																						5
AGCTC/AGCTG	4																																						4
ATATC/ATATG	23	2																																					25
ATCGC/ATGCG	1																																						1
ATGCC/ATGGC	6		1																																				7
AAAAAC/GTTTTT	13																																						13
AAAAAG/CTTTTT	87		1																																				88
AAAAAT/ATTTTT	108	3																																					111
AAAACG/CGTTTT	1																																						1
AAAACT/AGTTTT	11																																						11
AAAAGC/CTTTTG	5																																						5
AAAAGG/CCTTTT	3																																						3
AAAAGT/ACTTTT	6																																						6
AAAATC/ATTTTG	7																																						7
AAAATG/ATTTTC	36	2																																					38
AAAATT/AATTTT	54	1	1																																				56
AAACAC/GTGTTT	2																																						2
AAACAG/CTGTTT	4																																						4
AAACAT/ATGTTT	6	1																																					7
AAACTC/AGTTTG	1																																						1
AAACTG/AGTTTC	1																																						1
AAACTT/AAGTTT	4	2	1																																				7
AAAGAC/CTTTGT	1																																						1
AAAGAG/CTCTTT	63	4																																					67
AAAGAT/ATCTTT	3																																						3
AAAGGC/CCTTTG	1																																						1
AAAGGT/ACCTTT	1																																						1
AAAGTG/ACTTTC	2																																						2
AAATAC/ATTTGT	8	1																																					9
AAATAG/ATTTCT	16	3	1																																				20
AAATAT/ATATTT	12																																						12
AAATCC/ATTTGG	1																																						1
AAATCT/AGATTT	2																																						2
AAATGC/ATTTGC	4																																						4
AAATGG/ATTTCC	6																																						6
AAATGT/ACATTT	4																																						4
AAATTC/AATTTG	34	1																																					35
AAATTG/AATTTC	23	1																																					24
AAATTT/AAATTT	55	1	1																																				57
AACAAT/ATTGTT	10																																						10
AACACT/AGTGTT	1																																						1
AACAGC/CTGTTG	30																																						30
AACAGG/CCTGTT				1																																			1
AACAGT/ACTGTT	3																																						3
AACATC/ATGTTG	3	2																																					5
AACATG/ATGTTC	1	1																																					2
AACCAC/GGTTGT	1																																						1
AACGAC/CGTTGT	4																																						4
AACGAG/CGTTCT	24	5	2																																				31
AACGGG/CCCGTT	150	100	13		1	1																																	265
AACGGT/ACCGTT	1																																						1
AACGTG/ACGTTC		1																																					1
AACTAC/AGTTGT	6	1																																					7
AACTTC/AAGTTG	3																																						3
AACTTG/AAGTTC	11																																						11
AAGAAT/ATTCTT	5																																						5
AAGAGC/CTCTTG	5																																						5
AAGAGG/CCTCTT	1																																						1
AAGATC/ATCTTG	23	2																																					25
AAGATG/ATCTTC	10	3																																					13
AAGATT/AATCTT	4																																						4
AAGCAC/CTTGTG	1																																						1
AAGCAG/CTGCTT	7																																						7
AAGCAT/ATGCTT	1																																						1
AAGCTG/AGCTTC	3																																						3
AAGGAC/CCTTGT	1																																						1
AAGGAG/CCTTCT	4																																						4
AAGGAT/ATCCTT	2																																						2
AAGTAG/ACTTCT	1																																						1
AAGTGC/ACTTGC	1																																						1
AAGTGG/ACTTCC	1																																						1
AATACT/AGTATT	2																																						2
AATAGC/ATTGCT	1																																						1
AATAGT/ACTATT	2																																						2
AATATC/ATATTG	3																																						3
AATATG/ATATTC	3																																						3
AATATT/AATATT	1																																						1
AATCAC/ATTGTG	1																																						1
AATCAG/ATTCTG	4																																						4
AATCAT/ATGATT	1																																						1
AATCCT/AGGATT	1																																						1
AATCTG/AGATTC	1																																						1
AATGAC/ATTGTC	1																																						1
AATGAG/ATTCTC	18	2																																					20
AATGAT/ATCATT	2																																						2
AATGGC/ATTGCC	2																																						2
AATGGG/ATTCCC	1																																						1
AATGTG/ACATTC	2	1																																					3
AATTAG/AATTCT	2																																						2
AATTAT/AATTAT	2																																						2
AATTCC/AATTGG	2																																						2
ACACAG/CTGTGT	5																																						5
ACACAT/ATGTGT	6	1																																					7
ACACGC/CGTGTG	1																																						1
ACACTC/AGTGTG	1																																						1
ACAGAG/CTCTGT	1																																						1
ACATAG/ATGTCT	2																																						2
ACATAT/ATATGT	1																																						1
ACATCT/AGATGT	1																																						1
ACATGG/ATGTCC	1																																						1
ACATGT/ACATGT	17																																						17
ACCATC/ATGGTG	1																																						1
ACCATG/ATGGTC	4																																						4
ACCCTC/AGGGTG	1																																						1
ACCTCT/AGAGGT	1																																						1
ACGAGG/CCTCGT	1																																						1
ACGATC/ATCGTG	1																																						1
ACGATG/ATCGTC	4																																						4
ACGTCG/ACGTCG	1																																						1
ACTAGC/AGTGCT	1																																						1
ACTATG/AGTCAT	1																																						1
ACTCAT/AGTATG	1																																						1
ACTCTC/AGAGTG	1																																						1
ACTGCC/AGTGGC	1																																						1
ACTGCT/AGCAGT	10																																						10
AGAGCG/CGCTCT	1																																						1
AGATAT/ATATCT	1																																						1
AGATCG/ATCTCG	2																																						2
AGATCT/AGATCT	1																																						1
AGCAGG/CCTGCT	1																																						1
AGCATC/ATGCTG	1																																						1
AGCGGC/CCGCTG	1																																						1
AGCTGC/AGCTGC	1																																						1
AGGATC/ATCCTG	2																																						2
AGGATG/ATCCTC	2																																						2
ATCATG/ATCATG	1																																						1
ATCCCG/ATCGGG	12	5																																					17
ATCGGC/ATGCCG	1																																						1
