Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae335439d9c3/fasta/6ae335439d9c3_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              107
Total size of examined sequences (bp):           1993744
Total number of identified SSRs:                 22
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	1
5	7
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG	-	-	-								1	1
ATT	-	-	1									1
CAT	-	-	1									1
TGG	-	-	1									1
ATTT	-	1										1
ATAAA	1											1
ATTAT	1											1
GTTTT	1											1
TAATT	1											1
TATTT	1											1
TTAAA	1											1
TTATA	1											1
AAACCA	1											1
AAAGCA	1											1
AAATCA	2											2
AAGATA	1											1
AGAAAA	1											1
GAAAAA	1											1
GCATAA	1											1
GCGGTG		1										1
TTTATG		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-								1	1
AAT/ATT	-	-	1									1
ACC/GGT	-	-	1									1
ATC/ATG	-	-	1									1
AAAT/ATTT	-	1										1
AAAAC/GTTTT	1											1
AAAAT/ATTTT	2											2
AAATT/AATTT	2											2
AATAT/ATATT	2											2
AAAAAG/CTTTTT	2											2
AAAACC/GGTTTT	1											1
AAAAGC/CTTTTG	1											1
AAAATC/ATTTTG	2											2
AAACAT/ATGTTT		1										1
AAAGAT/ATCTTT	1											1
AAGCAT/ATGCTT	1											1
ACCGCC/CGGTGG		1										1
