Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae335461dd41/fasta/6ae335461dd41_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              660
Total size of examined sequences (bp):           4211730
Total number of identified SSRs:                 12
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	4
5	3
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-		1	1
GC	-	-	-	2		2
CAC	-	-	1			1
CGG	-	-	1			1
GCC	-	-	1			1
GGT	-	-	1			1
AATAA	1					1
GCCAG	1					1
GCCTG	1					1
GAAGAG				1		1
GAGCCA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	2	1	3
ACC/GGT	-	-	2			2
CCG/CGG	-	-	2			2
AAAAT/ATTTT	1					1
AGGCC/CCTGG	2					2
AAGAGG/CCTCTT				1		1
AGAGCC/CTCTGG	1					1
