Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae33542e7759/fasta/6ae33542e7759_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              37
Total size of examined sequences (bp):           4560722
Total number of identified SSRs:                 20
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	5
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	3	3
GC	-	-	-	1	1
CCG	-	-	1		1
CGC	-	-	1		1
CGG	-	-	1		1
GCC	-	-	1		1
GCT	-	-	1		1
CGCGG	1				1
GCGCA	1				1
GCGCG	1				1
GGCGC	1				1
GGCGT	1				1
CAACAG	1				1
CGACTT	1				1
CTGGCG	1				1
GCCAGC	1				1
GGTGAT	1				1
TCAATC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	4	4
AGC/CTG	-	-	1		1
CCG/CGG	-	-	4		4
ACGCC/CGTGG	1				1
AGCGC/CGCTG	1				1
CCGCG/CGCGG	3				3
AACAGC/CTGTTG	1				1
AAGTCG/ACTTCG	1				1
AATCTC/AGATTG	1				1
ACCATC/ATGGTG	1				1
AGCGCC/CGCTGG	2				2
