Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae332ecaa344/fasta/6ae332ecaa344_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              81
Total size of examined sequences (bp):           4625257
Total number of identified SSRs:                 34
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	11
4	1
5	4
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	5		1	6
GC	-	-	-	1			1
TA	-	-	-	1			1
CCG	-	-	1	1			2
CGC	-	-	2				2
CGG	-	-	2				2
CTG	-	-			1		1
GCG	-	-	1				1
GCT	-	-	2				2
GGC	-	-	1				1
TGGC	-	1					1
ATTTT	1						1
CGCGC	1						1
GCGCC	1						1
GCGGC	1						1
ATTCAT	1						1
CAACTA		1					1
CACGAC		1					1
CGACCA					1		1
CGACGG	1						1
CTGGCG	1						1
GAAGTC	1						1
GCCAGC	1						1
GCTCCG	1						1
TGCTGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1			1
CG/CG	-	-	-	6		1	7
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	7	1			8
AGCC/CTGG	-	1					1
AAAAT/ATTTT	1						1
CCGCG/CGCGG	3						3
AACTAC/AGTTGT		1					1
AAGTCG/ACTTCG	1						1
AATATG/ATATTC	1						1
ACCACG/CGTGGT		1			1		2
ACCAGC/CTGGTG	1						1
ACGGCG/CCGTCG	1						1
AGCCGG/CCGGCT	1						1
AGCGCC/CGCTGG	2						2
