Specifications
==============

Sequence source file: "/srv/lustre01/project/qmm_mm_pet-j9cm8n271e4/shared/webserver/new-megassr-v5/results/6ae332ec5242c/fasta/6ae332ec5242c_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           4626671
Total number of identified SSRs:                 24
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	8
4	1
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4		1	5
GC	-	-	-	1			1
ACC	-	-	1				1
CCG	-	-	1				1
CGC	-	-	2				2
CTG	-	-			1		1
GCT	-	-	2				2
TTA	-	-	1				1
GCCA	-	1					1
CGCGC	1						1
GCGCA	1						1
GCGCC	1						1
ACCACG				1			1
ACCATG		1					1
CGCCAG	1						1
GAAGTC	1						1
GACAAT	1						1
GCCAGC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	5		1	6
AAT/ATT	-	-	1				1
ACC/GGT	-	-	1				1
AGC/CTG	-	-	2		1		3
CCG/CGG	-	-	3				3
AGCC/CTGG	-	1					1
AGCGC/CGCTG	1						1
CCGCG/CGCGG	2						2
AAGTCG/ACTTCG	1						1
AATGAC/ATTGTC	1						1
ACCACG/CGTGGT				1			1
ACCATG/ATGGTC		1					1
AGCGCC/CGCTGG	2						2
