Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-150/megassr/results/hub_GCF_943066425.1/fasta/hub_GCF_943066425.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           4793508
Total number of identified SSRs:                 30
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    6


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	7
2	4
3	6
4	2
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1						1
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1				2	6
CG	-	-	-	3																					3
GC	-	-	-	1																					1
CCG	-	-	1																						1
CGG	-	-	1																						1
GCA	-	-	1																						1
GCC	-	-	1																						1
GCG	-	-	1																						1
GCT	-	-	1																						1
GCCA	-	1																							1
TATT	-	1																							1
AGAGA		1																							1
CAGCG	1																								1
GCATC	1																								1
GCGCA	1																								1
GCGCC	1																								1
GCGCG	1																								1
ACCGAG			1																						1
CTGGCG	1																								1
GAAGTC	1																								1
GCCAGC	1																								1
TGGTCG							1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	1				2	6
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1						1
CG/CG	-	-	-	4																					4
AGC/CTG	-	-	2																						2
CCG/CGG	-	-	4																						4
AAAT/ATTT	-	1																							1
AGCC/CTGG	-	1																							1
AAGAG/CTCTT		1																							1
AGCGC/CGCTG	2																								2
ATCGC/ATGCG	1																								1
CCGCG/CGCGG	2																								2
AAGTCG/ACTTCG	1																								1
ACCACG/CGTGGT							1																		1
ACCGAG/CGGTCT			1																						1
AGCGCC/CGCTGG	2																								2
