Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_914492715.1/fasta/hub_GCF_914492715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              311
Total size of examined sequences (bp):           7814349
Total number of identified SSRs:                 179
Number of SSR containing sequences:              103
Number of sequences containing more than 1 SSR:  40
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	45
3	20
4	3
5	49
6	62

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
CG	-	-	-	23	2																		25
GC	-	-	-	20																			20
ACG	-	-	1																				1
CCG	-	-	1																				1
CGA	-	-	1																				1
CGC	-	-	3	1																			4
CGG	-	-	3	1																			4
GCC	-	-		1	1																		2
GCG	-	-	4																				4
GCT	-	-	1																				1
TCA	-	-	1																				1
TGC	-	-	1																				1
ACCA	-																					1	1
CCGC	-	1																					1
GGCC	-	1																					1
ACAAC			1																				1
AGCGC	1																						1
CACGC	1																						1
CCCGC	1																						1
CCGCG	1																						1
CCGGC	1																						1
CGACG	1																						1
CGATC			1																				1
CGCAA	1																						1
CGCCG	1																						1
CGCGA		1																					1
CGCGC	7																						7
CGCGT	1																						1
CGGCA	1																						1
CGGCC	1																						1
CGGCG	1																						1
GCACG	1																						1
GCCCG	1																						1
GCCGG		1																					1
GCGCA	1																						1
GCGCC	1																						1
GCGCG	7	1																					8
GCGGC	1																						1
GCGGG	1																						1
GCGGT	2																						2
GCTCG				1																			1
GGCAG	1																						1
GGCCG		1																					1
GGCTT												1											1
GGGCT	1																						1
TCATT	1																						1
TGCCG	1	1																					2
TGCGG	1																						1
TGCGT	1																						1
ACAACT	1																						1
ACCCGC	1																						1
ACGCAG			1																				1
ACGCGA		1																					1
ACGGCC			1																				1
AGTTCC	1																						1
ATCGGC	1																						1
CACGAT				1																			1
CAGCGA	1																						1
CATCGA	1																						1
CATCGC	1																						1
CCGGCG	1																						1
CCGTAT	1																						1
CCTGCA	1																						1
CGAACG	1																						1
CGCACC	1																						1
CGCATC							1																1
CGCCCA	1																						1
CGCCCT	1																						1
CGCGGC	1																						1
CGGCAC	1		1																				2
CGGCAT	1		1																				2
CGGCCG	1																						1
CGGCGC	1																						1
CGGGCA		1																					1
CGGGCT	1																						1
CGTCGC	1																						1
CGTGCC			1																				1
CTCAGG										1													1
GCACCG		1																					1
GCACGA	1																						1
GCCATC	1																						1
GCCGAA	1																						1
GCCGAT	1																						1
GCCGCT	1																						1
GCCGGT	1																						1
GCGCCA	1																						1
GCGCCG	1																						1
GCGGCC	1																						1
GCGGCT	1																						1
GCGTCG	1																						1
GCTGCG	1																						1
GGCGCG	1																						1
GGCTGC				1																			1
GGCTTG	1					1																	2
GGTCGA	1																						1
GTCGAC	1																						1
GTCGAT		1																					1
GTGTCG							1																1
GTTCCG	1																						1
TAGCCA		1																					1
TCACCA				1																			1
TCGACC	1																						1
TCGGCA						1																	1
TCGGCG			1																				1
TCGGCT								1															1
TGTCGA		1																					1
TGTGCC	1																						1
TTGGGC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
CG/CG	-	-	-	43	2																		45
ACG/CGT	-	-	2																				2
AGC/CTG	-	-	2																				2
ATC/ATG	-	-	1																				1
CCG/CGG	-	-	11	3	1																		15
AACC/GGTT	-																					1	1
CCCG/CGGG	-	1																					1
CCGG/CCGG	-	1																					1
AAATG/ATTTC	1																						1
AACAC/GTGTT			1																				1
AACGC/CGTTG	2																						2
AAGCC/CTTGG												1											1
ACCGC/CGGTG	3																						3
ACGCC/CGTGG	1																						1
ACGCG/CGCGT	2	1																					3
ACGGC/CCGTG	3	1																					4
AGCCC/CTGGG	1																						1
AGCCG/CGGCT				1																			1
AGCGC/CGCTG	2																						2
AGGGC/CCCTG	1																						1
ATCCG/ATCGG			1																				1
CCCCG/CGGGG	2																						2
CCCGG/CCGGG	3	2																					5
CCGCG/CGCGG	19	1																					20
AACCGG/CCGGTT	1																						1
AACGCG/CGCGTT	1	1																					2
AACTAC/AGTTGT	1																						1
AACTGG/AGTTCC	1																						1
AAGCCC/CTTGGG	2					1																	3
AAGCCG/CGGCTT	1							1															2
ACACCG/CGGTGT							1																1
ACAGCG/CGCTGT	1																						1
ACAGGC/CCTGTG	1																						1
ACATCG/ATGTCG	1	2																					3
ACCATC/ATGGTG				1																			1
ACCCGC/CGGGTG	2																						2
ACCGGC/CCGGTG	2	1	1																				4
ACCTCG/AGGTCG	2																						2
ACCTGC/AGGTGC	1																						1
ACGAGC/CGTGCT	1																						1
ACGATC/ATCGTG				1																			1
ACGCAG/CGTCTG			1																				1
ACGCCC/CGTGGG	1																						1
ACGCCG/CGGCGT	1		1																				2
ACGGAT/ATCCGT	1																						1
ACGGCC/CCGTGG			1																				1
ACGGCG/CCGTCG	1																						1
ACGGGC/CCCGTG		1	1																				2
ACGTCG/ACGTCG	1																						1
AGCCAT/ATGGCT		1																					1
AGCCCG/CGGGCT	1																						1
AGCCGC/CGGCTG	2			1																			3
AGCCTG/AGGCTC										1													1
AGCGCC/CGCTGG	1																						1
AGCGGC/CCGCTG	1																						1
AGGGCG/CCCTCG	1																						1
ATCCGC/ATGCGG							1																1
ATCGCC/ATGGCG	2																						2
ATCGGC/ATGCCG	3		1			1																	5
CCCGCG/CGCGGG	1																						1
CCGCGG/CCGCGG	3																						3
CCGGCG/CCGGCG	3																						3
