Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-150/megassr/results/hub_GCF_914484905.1/fasta/hub_GCF_914484905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              381
Total size of examined sequences (bp):           6479708
Total number of identified SSRs:                 236
Number of SSR containing sequences:              135
Number of sequences containing more than 1 SSR:  61
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	72
3	27
4	4
5	59
6	74

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	28	7	1								36
GC	-	-	-	33	3									36
ACG	-	-	1											1
CAG	-	-		1										1
CCG	-	-	4											4
CGA	-	-	1											1
CGC	-	-	4											4
CGG	-	-	2											2
CGT	-	-	1											1
CTG	-	-	1											1
GCC	-	-		1										1
GCG	-	-	4		1									5
GCT	-	-	1											1
GGC	-	-	2											2
TCG	-	-	2											2
TGA	-	-	1											1
ACGC	-	1												1
CGGC	-	2												2
GCCG	-	1												1
ACGCG	1													1
ACGGC	1													1
CAGCG	2													2
CCCGC	1													1
CCGAA	1													1
CCGCG	1													1
CCTCG	1													1
CGATG								1						1
CGCAC	1													1
CGCCG	3													3
CGCGC	6													6
CGCGG	3	1												4
CGCGT	2													2
CGGCG	1													1
CGTGC	1													1
GAGGC	1													1
GCCCG	1													1
GCCGC	3													3
GCGCG	10													10
GCGGC	6													6
GCGGT	1													1
GCTCG						1								1
GGAAT	1													1
GGCGC	2													2
GGCGG	1													1
GGGCT					1									1
TGCGG	1													1
TGGCT													1	1
TGTCG	1													1
TTCGT	1													1
ACCGAC	1													1
ATCCGC	1													1
ATCGCA	1													1
CATCGA	1													1
CCACGA	1													1
CCGCAC				1										1
CCGCAT	1													1
CCGCCA	1													1
CCGCTT	1													1
CCGGAG	1													1
CGAAGC	1													1
CGACGC	1													1
CGACGT	1													1
CGAGCG	1													1
CGATGC	1													1
CGCAGG	1													1
CGCCAA	1		1											2
CGCCAC	1													1
CGCCGA	1			1										2
CGCGGC	1													1
CGCGGT	1													1
CGCTCG	1													1
CGGCAG	1													1
CGGCAT	1													1
CGTCGA	1													1
CTTCGG	1													1
GACCAA	1													1
GACTGG	1													1
GCAGCG	1													1
GCATGC		1												1
GCCACC		1												1
GCCGAT	1													1
GCGAGG		1												1
GCGCCG	3													3
GCGCGA	1													1
GCGCGG	1													1
GCGGAG			1											1
GCGGCT		1												1
GCGGTG	1													1
GCTCGT					1									1
GGCATC			1											1
GGCGAC	1		1											2
GGCGCA		1												1
GGCTCC	1													1
GGCTCG	1													1
GGCTCT											1			1
GGCTGA	1													1
GGCTTC	1													1
GGCTTT	1													1
GGTCGA	1													1
GGTCGT	1													1
GGTTGC				1										1
GTCGAC	3													3
GTCGCA	1													1
GTTGCC			1											1
TAGCGG			1											1
TCGCAA	1													1
TCGCCG		1												1
TCGCTG	1													1
TCGGCA	1													1
TCGGCT									1					1
TGCCGA	1													1
TGCCGG	1													1
TGCGCC	1													1
TGCTGG	1													1
TGGGGC	1													1
TTTCGG	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	61	10	1								72
ACG/CGT	-	-	5											5
AGC/CTG	-	-	2	1										3
ATC/ATG	-	-	1											1
CCG/CGG	-	-	16	1	1									18
ACGC/CGTG	-	1												1
CCGG/CCGG	-	3												3
AAACG/CGTTT	1													1
AACCG/CGGTT	1													1
AAGCC/CTTGG													1	1
AATGG/ATTCC	1													1
ACACG/CGTGT	1													1
ACCGC/CGGTG	3													3
ACGCG/CGCGT	3													3
ACGGC/CCGTG	2													2
AGCCC/CTGGG					1									1
AGCCG/CGGCT						1								1
AGCGC/CGCTG	2													2
AGGCG/CCTCG	2													2
ATCGC/ATGCG								1						1
CCCCG/CGGGG	2													2
CCCGG/CCGGG	1													1
CCGCG/CGCGG	35	1												36
AAACCG/CGGTTT	1													1
AAAGCC/CTTTGG	1													1
AACCGC/CGGTTG				1										1
AACGCC/CGTTGG	1		1											2
AACGGC/CCGTTG			1											1
AAGACC/CTTGGT	1													1
AAGCCG/CGGCTT	3								1					4
AAGCGG/CCGCTT	1													1
AATCGC/ATTGCG	2													2
ACACCG/CGGTGT	1													1
ACAGCG/CGCTGT	1													1
ACATCG/ATGTCG	1													1
ACCACG/CGTGGT	2													2
ACCAGC/CTGGTG	1													1
ACCCGC/CGGGTG				1										1
ACCGCC/CGGTGG	3	1												4
ACCGCG/CGCGGT	1													1
ACCGCT/AGCGGT			1											1
ACCGGC/CCGGTG	1													1
ACCTCG/AGGTCG	1													1
ACGAGC/CGTGCT					1									1
ACGCCG/CGGCGT	2			1										3
ACGGCG/CCGTCG	1	1	1											3
ACGTCG/ACGTCG	5													5
ACTGCG/AGTCGC	1													1
ACTGGG/AGTCCC	1													1
AGAGCC/CTCTGG											1			1
AGCCCC/CTGGGG	1													1
AGCCCG/CGGGCT	1													1
AGCCGC/CGGCTG		1												1
AGCCGG/CCGGCT	2													2
AGCCTC/AGGCTG	1													1
AGCGCG/CGCGCT	3													3
AGCGGC/CCGCTG	2													2
AGGCGC/CCTGCG	2	1												3
AGGCGG/CCGCCT			1											1
AGGGCG/CCCTCG		1												1
ATCCGC/ATGCGG	2													2
ATCGGC/ATGCCG	5		1											6
ATGCGC/ATGCGC		1												1
CCCGCG/CGCGGG	1													1
CCGCGG/CCGCGG	1													1
CCGGCG/CCGGCG	3													3
