Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_914484805.1/fasta/hub_GCF_914484805.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              206
Total size of examined sequences (bp):           6513787
Total number of identified SSRs:                 221
Number of SSR containing sequences:              93
Number of sequences containing more than 1 SSR:  50
Number of SSRs present in compound formation:    14


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	79
3	23
4	5
5	53
6	61

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	31	8								39
GC	-	-	-	38	2								40
ACG	-	-	1										1
CCG	-	-	4										4
CGA	-	-	2										2
CGC	-	-	2			1							3
CGG	-	-	1	1									2
GCG	-	-	7										7
GCT	-	-	1										1
GGC	-	-	1										1
TCA	-	-	1										1
TCG	-	-	1										1
CGGC	-	1											1
GCAG	-		1										1
GCCC	-	1											1
GCCG	-	1											1
TCGG	-	1											1
ACGGC	1												1
ATCGA	1												1
CACGT				1									1
CCGCG	2												2
CGATG							1						1
CGCCG	3	2											5
CGCGC	6												6
CGCGG	1												1
CGCGT	2												2
CGCTG	1												1
CGGCA	1		1										2
CGGCG	1												1
GACGC	1												1
GCCCG	1												1
GCCGC	3												3
GCGCC	2												2
GCGCG	7												7
GCGGC	4												4
GCGGG	1												1
GCTCG		1											1
GGAAT	1												1
GGCGC	2												2
GGCGG	1												1
GGCGT	1												1
GGCTG		1											1
GGGCT	1												1
TGGCT						1							1
TGTCG	1												1
ACGCCA	1												1
ACGTCG	1												1
AGCGCC	1												1
CACGAC	1												1
CACGAG										1			1
CAGGAA	1												1
CATCGA	1												1
CCCACG	1												1
CCGCAT			1										1
CCGGCA	1												1
CCGGCC	1												1
CGAACG	1												1
CGACAG	1												1
CGAGCG	1												1
CGCAGC		1											1
CGCCAA	1	1											2
CGCCGA	1												1
CGCGTG		1											1
CGGCGA	1												1
CGGCGC	1												1
CGGCTG								1					1
CGGCTT	1												1
CGTCCG		1											1
CTTCGG	1												1
CTTGGG	1												1
GACTGG	1												1
GAGCCA											1		1
GCCGGC	1												1
GCCTCA								1					1
GCGAGC	1												1
GCGAGG	1												1
GCGCCC	1												1
GCGCCG	3												3
GCGCGA	1												1
GCGGAG		1											1
GCGTCG	1												1
GCGTGC	1												1
GCTCCC	1												1
GCTGGA	1												1
GCTTCG					1								1
GGCGAC			1										1
GGCGAT	1												1
GGCGCG	1												1
GGCTTC				1									1
GGTCGA	1												1
GGTGCT								1					1
GTCGCA	1												1
GTCGCT			1										1
GTCGGT		1		1									2
GTTGCC												1	1
TCGCAA			1										1
TCGCGA	1												1
TCGGCT				2									2
TGCCGA	1												1
TGCCGT		1											1
TTCCAG				1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG/CG	-	-	-	69	10								79
ACG/CGT	-	-	4										4
AGC/CTG	-	-	1										1
ATC/ATG	-	-	1										1
CCG/CGG	-	-	15	1		1							17
ACCG/CGGT	-	1											1
AGGC/CCTG	-		1										1
CCCG/CGGG	-	1											1
CCGG/CCGG	-	2											2
AAGCC/CTTGG						1							1
AATCG/ATTCG	1												1
AATGG/ATTCC	1												1
ACACG/CGTGT	1												1
ACGCC/CGTGG	1												1
ACGCG/CGCGT	3												3
ACGGC/CCGTG	2		1										3
ACGTC/ACGTG				1									1
AGCCC/CTGGG	1	1											2
AGCCG/CGGCT		1											1
AGCGC/CGCTG	1												1
ATCGC/ATGCG							1						1
CCCCG/CGGGG	2												2
CCCGG/CCGGG	1												1
CCGCG/CGCGG	31	2											33
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG	2	1											3
AACGCG/CGCGTT	1												1
AACGGC/CCGTTG		1										1	2
AACTGG/AGTTCC				1									1
AAGCCC/CTTGGG	1												1
AAGCCG/CGGCTT	2			3	1								6
AATCGC/ATTGCG			1										1
ACACCG/CGGTGT		1		1									2
ACAGCG/CGCTGT	1		1										2
ACATCG/ATGTCG	1												1
ACCACG/CGTGGT	1												1
ACCAGC/CTGGTG								1					1
ACCGGC/CCGGTG	1												1
ACCTCG/AGGTCG	1												1
ACGAGC/CGTGCT										1			1
ACGCCC/CGTGGG	1												1
ACGCCG/CGGCGT	2												2
ACGCGC/CGCGTG	1	1											2
ACGCGG/CCGCGT		1											1
ACGGCG/CCGTCG	1		1										2
ACGTCG/ACGTCG	1												1
ACTGCG/AGTCGC	1												1
ACTGGG/AGTCCC	1												1
AGAGCC/CTCTGG											1		1
AGCCGC/CGGCTG		1						1					2
AGCCTC/AGGCTG								1					1
AGCGCC/CGCTGG	1												1
AGCGCG/CGCGCT	3												3
AGCGGG/CCCGCT	1												1
AGCTCC/AGCTGG	1												1
AGGCGG/CCGCCT		1											1
AGGGCG/CCCTCG	1												1
ATCCGC/ATGCGG			1										1
ATCGCC/ATGGCG	1												1
ATCGCG/ATCGCG	1												1
ATCGGC/ATGCCG	1												1
CCCCGG/CCGGGG	1												1
CCCGCG/CGCGGG	2												2
CCGGCG/CCGGCG	5												5
