Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_914484755.1/fasta/hub_GCF_914484755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              394
Total size of examined sequences (bp):           8014003
Total number of identified SSRs:                 196
Number of SSR containing sequences:              130
Number of sequences containing more than 1 SSR:  40
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	68
3	22
4	2
5	64
6	38

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1															1	2
CG	-	-	-	24	1																																	25
GA	-	-	-	1																																		1
GC	-	-	-	35	5																																	40
TC	-	-	-	2																																		2
ATC	-	-	1																																			1
CAC	-	-	1																																			1
CCG	-	-	2																																			2
CGC	-	-	4																																			4
CGG	-	-	1																																			1
CGT	-	-	1																																			1
GCA	-	-	1																																			1
GCC	-	-	4	1																																		5
GCG	-	-	4																																			4
GGC	-	-	1																																			1
GTG	-	-	1																																			1
CGGC	-	2																																				2
ACGCG	1																																					1
ATCCA		1																																				1
CATCG	1																																					1
CCGCG	1																																					1
CCGGC	1																																					1
CGACA	1																																					1
CGCCC	1																																					1
CGCCG	4																																					4
CGCGA	2																																					2
CGCGC	12																																					12
CGCGG	5																																					5
CGGCA	1																																					1
CGGCC	3																																					3
CGGCG	4																																					4
GAATC	1																																					1
GCCGC	3																																					3
GCGCC	2																																					2
GCGCG	4																																					4
GCGGC	6																																					6
GCGTC	1																																					1
GCTCA	1																																					1
GGATT	1																																					1
GGCCC	1																																					1
GGCCG	2																																					2
GGCGC	1																																					1
GGGTC	1																																					1
TGCCG	1																																					1
TTGCG	1																																					1
ACGAGA	1																																					1
ATCGGC	1																																					1
CAACGG	1																																					1
CACCGC	1																																					1
CCGCAT		1																																				1
CCGCCT	1																																					1
CCGGCG	1																																					1
CCTGCT								1																														1
CGAATC	1																																					1
CGAGGT	1																																					1
CGATGC	1																																					1
CGATGG							1																															1
CGCTGA	1																																					1
CGGCAT	1																																					1
CGGCCG	1																																					1
CGGGCT	1																																					1
CGGTGG	1																																					1
CGTGGT					1																																	1
CTGGCG	1																																					1
GATGCC	1																																					1
GCACCC	1																																					1
GCAGCG	1																																					1
GCCAGC	1																																					1
GCCGCT		1																																				1
GCCTCG		1																																				1
GCCTCT	1																																					1
GCCTGC	1																																					1
GCGCAT	1																																					1
GCGGCC	1																																					1
GCGGTG	1																																					1
GCGTCG	1																																					1
GCTTGG	1																																					1
GGCCGT	1																																					1
GGTGCT	1																																					1
GTCGCG	1																																					1
TCGAGG	1																																					1
TGCCGA	1																																					1
TGCCGT		1																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1															1	2
AG/CT	-	-	-	3																																		3
CG/CG	-	-	-	59	6																																	65
ACC/GGT	-	-	2																																			2
ACG/CGT	-	-	1																																			1
AGC/CTG	-	-	1																																			1
ATC/ATG	-	-	1																																			1
CCG/CGG	-	-	16	1																																		17
CCGG/CCGG	-	2																																				2
AACGC/CGTTG	1																																					1
AATCC/ATTGG	1	1																																				2
AATCG/ATTCG	1																																					1
ACACG/CGTGT	1																																					1
ACCCG/CGGGT	1																																					1
ACGCG/CGCGT	4																																					4
ACGGC/CCGTG	2																																					2
AGCTC/AGCTG	1																																					1
ATCGC/ATGCG	1																																					1
CCCCG/CGGGG	1																																					1
CCCGG/CCGGG	7																																					7
CCGCG/CGCGG	42																																					42
AACGAG/CGTTCT	1																																					1
AACGGC/CCGTTG	1	1																																				2
AAGCCC/CTTGGG	1																																					1
AATCCG/ATTCGG	1																																					1
ACCACG/CGTGGT					1																																	1
ACCAGC/CTGGTG	1																																					1
ACCCGC/CGGGTG	1																																					1
ACCGCC/CGGTGG	3																																					3
ACCGCG/CGCGGT	1																																					1
ACCTCG/AGGTCG	2																																					2
ACGCCG/CGGCGT	1																																					1
ACGCTG/AGCGTC	1																																					1
ACGGCC/CCGTGG	1																																					1
AGAGGC/CCTCTG	1																																					1
AGCAGG/CCTGCT								1																														1
AGCCCG/CGGGCT	1																																					1
AGCGCC/CGCTGG	2																																					2
AGCGGC/CCGCTG	1	1																																				2
AGGCCG/CCTCGG		1																																				1
AGGCGC/CCTGCG	1																																					1
AGGCGG/CCGCCT	1																																					1
ATCCGC/ATGCGG		1																																				1
ATCGCC/ATGGCG							1																															1
ATCGGC/ATGCCG	5																																					5
ATGCGC/ATGCGC	1																																					1
CCGCGG/CCGCGG	2																																					2
CCGGCG/CCGGCG	1																																					1
