Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-145/megassr/results/hub_GCF_903166275.1/fasta/hub_GCF_903166275.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              32
Total size of examined sequences (bp):           5384482
Total number of identified SSRs:                 40
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
4	1
5	4
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2	1		3
GC	-	-	-	2			2
CAG	-	-	3				3
CCA	-	-	1				1
CCG	-	-	3				3
CGC	-	-		2			2
CGG	-	-	2				2
CGT	-	-		1			1
CTG	-	-	1				1
GAC	-	-	1				1
GCC	-	-	1				1
GGC	-	-	1				1
GGT	-	-	1				1
GTC	-	-	1				1
GGTT	-		1				1
CGCGC	1						1
CTTGG	1						1
GCGCG	1						1
TAAAA	1						1
ATTTCT						1	1
CCACGA	1						1
CCGGAG		1					1
GAAGTC	1						1
GAGCTG	1						1
GCCAGC	1						1
GGCGGT	1						1
GGCTGG	1						1
GGTCAG	1						1
TCTTCG	1						1
TGAAGA	1						1
TTCCAC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4	1		5
ACC/GGT	-	-	2				2
ACG/CGT	-	-	2	1			3
AGC/CTG	-	-	4				4
CCG/CGG	-	-	7	2			9
AACC/GGTT	-		1				1
AAAAT/ATTTT	1						1
AAGCC/CTTGG	1						1
CCGCG/CGCGG	2						2
AAATAG/ATTTCT						1	1
AAGACG/CGTCTT	1						1
AAGATG/ATCTTC	1						1
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
ACCACG/CGTGGT	1						1
ACCCTG/AGGGTC	1						1
ACCGCC/CGGTGG	1						1
AGCCCC/CTGGGG	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	1						1
AGCTCC/AGCTGG	1						1
