Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_903112945.1/fasta/hub_GCF_903112945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           5563857
Total number of identified SSRs:                 41
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	18
5	8
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	1	4
GC	-	-	-	1		1
CAG	-	-	1			1
CCA	-	-	1			1
CCG	-	-	4			4
CGC	-	-	2			2
CGG	-	-	1			1
CTG	-	-	2			2
GAC	-	-	1			1
GCC	-	-	2	1		3
GCG	-	-	1			1
GGC	-	-	1			1
GTC	-	-	1			1
AATAA	1					1
CCACG	1					1
CCGCG	1					1
CTGGT	1					1
GCCCG	1					1
GGCGC	2					2
TTTAT	1					1
CGGTAT	1					1
CTGGTG	1					1
GAAGTC	1					1
GAGTCG	1					1
GCTCCG		1				1
GTCCGA	1					1
GTCGGA	1					1
GTGGAA	1					1
TCTTCG	1					1
TGGTGA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	4	1	5
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	3			3
CCG/CGG	-	-	11	1		12
AAAAT/ATTTT	2					2
ACCAG/CTGGT	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCATC/ATGGTG	1					1
ACCGAT/ATCGGT	1					1
ACTCCG/AGTCGG	2					2
ACTCGG/AGTCCG	1					1
AGCCGG/CCGGCT		1				1
