Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_903112175.1/fasta/hub_GCF_903112175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           5326641
Total number of identified SSRs:                 35
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	16
5	8
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2	1		3
GC	-	-	-	1			1
CAG	-	-	1			1	2
CCG	-	-	4				4
CGG	-	-	1				1
CTG	-	-	1				1
GCA	-	-	1				1
GCC	-	-	1				1
GCG	-	-	2				2
GGC	-	-		1			1
GGT	-	-	1				1
TCA	-	-	1				1
TCG	-	-	1				1
ATTTA	1						1
CCACG	1						1
CCGCG	1						1
CGCGC	1						1
GCCGG	1						1
GCGCC	1						1
TTATT	1						1
TTTAT	1						1
CACCAG	1						1
CGACTT	1						1
CGGTAT	1						1
GAGAGT	1						1
GCTCCG		1					1
TCTTCG	1						1
TTCCAC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	3	1		4
ACC/GGT	-	-	1				1
ACG/CGT	-	-	1				1
AGC/CTG	-	-	3			1	4
ATC/ATG	-	-	1				1
CCG/CGG	-	-	8	1			9
AAAAT/ATTTT	2						2
AAATT/AATTT	1						1
ACGCC/CGTGG	1						1
CCCGG/CCGGG	1						1
CCGCG/CGCGG	3						3
AAGACG/CGTCTT	1						1
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
ACCAGC/CTGGTG	1						1
ACCGAT/ATCGGT	1						1
ACTCTC/AGAGTG	1						1
AGCCGG/CCGGCT		1					1
