Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-144/megassr/results/hub_GCF_903111825.1/fasta/hub_GCF_903111825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              29
Total size of examined sequences (bp):           5318275
Total number of identified SSRs:                 57
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	9
3	16
5	8
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	2	5
GC	-	-	-	3		3
TC	-	-	-	1		1
CAG	-	-	1			1
CCG	-	-	3			3
CGC	-	-	1	1		2
CGG	-	-	1			1
CGT	-	-	1			1
CTG	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	1			1
GGC	-	-	1			1
GGT	-	-	1			1
TCG	-	-	1			1
CCACG	1					1
CCGCG	1					1
CGCCG	2					2
CTGCC	1					1
GCGCC	1					1
GCGCG	1					1
GGGGA	1					1
AGCTGC	1					1
ATCGCC	1					1
ATGGTC		1				1
CACCAG	1					1
CAGCGC	1					1
CAGGAA	1					1
CGACTC		2				2
CGACTT	1					1
GACTCC	1					1
GAGCTG	1					1
GAGTCG	1					1
GCCTGG	1					1
GCTCCG		1				1
GGCGCT	1					1
GGGCGT	1					1
GTCGGA	1		1			2
GTCGGC	1					1
GTGCCT					1	1
TCAGGG	1					1
TCCGAA	1					1
TCTTCG	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	6	2	8
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	3			3
CCG/CGG	-	-	8	2		10
ACGCC/CGTGG	1					1
AGGGC/CCCTG	1					1
AGGGG/CCCCT	1					1
CCGCG/CGCGG	5					5
AACAGG/CCTGTT	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AATCCG/ATTCGG	1					1
ACAGGC/CCTGTG					1	1
ACCAGC/CTGGTG	1					1
ACCATG/ATGGTC		1				1
ACCCTG/AGGGTC	1					1
ACGCCC/CGTGGG	1					1
ACGCCG/CGGCGT	1					1
ACTCCG/AGTCGG	3	2	1			6
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	2					2
AGCTCC/AGCTGG	1					1
AGCTGC/AGCTGC	1					1
AGGCCC/CCTGGG	1					1
ATCGCC/ATGGCG	1					1
