Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-148/megassr/results/hub_GCF_902807305.1/fasta/hub_GCF_902807305.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              337
Total size of examined sequences (bp):           5262004
Total number of identified SSRs:                 64
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    34


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	45
2	5
3	8
5	2
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1				1					1	1									1						1																																																																																	6
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	5	1	2	1	1		2	1				1	1							1							3																																																																																2	27
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	2	1	2		1		2		1		2																																																																																																		11
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-															1																																																																																														1
AT	-	-	-	1																																																																																																																										1
CG	-	-	-	1																																																																																																																										1
GC	-	-	-	3																																																																																																																										3
ATC	-	-	1																																																																																																																											1
CGG	-	-	4																																																																																																																											4
CGT	-	-	1																																																																																																																											1
GCA	-	-	1																																																																																																																											1
TCA	-	-	1																																																																																																																											1
ACTAC	1																																																																																																																													1
TCCTT	1																																																																																																																													1
GAAGTC	1																																																																																																																													1
GATGAA	1																																																																																																																													1
TCAGGC		1																																																																																																																												1
TGGTGC	1																																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	112	113	114	115	116	117	118	119	120	121	122	123	124	125	126	127	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1				1					1	1		1							1						1																																																																																	7
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	6	3	2	2	1	2	2	2		2		1	1							1							3																																																																																2	38
AT/AT	-	-	-	1																																																																																																																										1
CG/CG	-	-	-	4																																																																																																																										4
ACG/CGT	-	-	1																																																																																																																											1
AGC/CTG	-	-	1																																																																																																																											1
ATC/ATG	-	-	2																																																																																																																											2
CCG/CGG	-	-	4																																																																																																																											4
AAAGG/CCTTT	1																																																																																																																													1
ACACT/AGTGT	1																																																																																																																													1
AAGATG/ATCTTC	1																																																																																																																													1
AAGTCG/ACTTCG	1																																																																																																																													1
ACCAGC/CTGGTG	1																																																																																																																													1
AGCCTG/AGGCTC		1																																																																																																																												1
