Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-147/megassr/results/hub_GCF_902807235.1/fasta/hub_GCF_902807235.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              167
Total size of examined sequences (bp):           5144655
Total number of identified SSRs:                 42
Number of SSR containing sequences:              28
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    10


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	21
2	5
3	8
4	1
5	3
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1									1																		3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1	1			1				1			1				1			1			1						11
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1		1			1			1					1											1	7
CG	-	-	-	1																																											1
GC	-	-	-	3																																											3
TA	-	-	-	1																																											1
CCG	-	-	3																																												3
CGG	-	-	1																																												1
CGT	-	-	1																																												1
GCA	-	-	1																																												1
TGA	-	-	2																																												2
GGGA	-	1																																													1
AAAAC	1																																														1
CCATT																								1																							1
TCCTT	1																																														1
CTGAGC		1																																													1
GAAGTC	1																																														1
GATGAA	1																																														1
GCACCA	1																																														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	1		1		1			1		1	1					1											1	10
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	2	1	1			1				1			1				1			1			1						11
AT/AT	-	-	-	1																																											1
CG/CG	-	-	-	4																																											4
ACG/CGT	-	-	1																																												1
AGC/CTG	-	-	1																																												1
ATC/ATG	-	-	2																																												2
CCG/CGG	-	-	4																																												4
AGGG/CCCT	-	1																																													1
AAAAC/GTTTT	1																																														1
AAAGG/CCTTT	1																																														1
AATGG/ATTCC																								1																							1
AAGATG/ATCTTC	1																																														1
AAGTCG/ACTTCG	1																																														1
ACCAGC/CTGGTG	1																																														1
AGCCTG/AGGCTC		1																																													1
