Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_902807195.1/fasta/hub_GCF_902807195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              88
Total size of examined sequences (bp):           5786653
Total number of identified SSRs:                 33
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
4	1
5	9
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	2	1	1	4
AGC	-	-	1				1
CAG	-	-	1				1
CCG	-	-	2				2
CGC	-	-	1				1
CGG	-	-	1	1			2
CTG	-	-	1				1
GGC	-	-	1				1
CCGG	-	1					1
AATAA	1						1
CGCCA	1						1
CGCCG	1						1
CGCGC	1	1					2
CTCAT	1						1
GCCAC	1						1
GCGCC	1						1
TTTTA	1						1
CATTGC				1			1
CGCCTG	1						1
CTGACC	1						1
CTGGCG	3						3
GAAGTC	1						1
GCCAGC	2						2
TTCCAC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	2	1	1	4
AGC/CTG	-	-	3				3
CCG/CGG	-	-	5	1			6
CCGG/CCGG	-	1					1
AAAAT/ATTTT	2						2
ACGCC/CGTGG	2						2
AGATG/ATCTC	1						1
CCGCG/CGCGG	3	1					4
AAGTCG/ACTTCG	1						1
AAGTGG/ACTTCC	1						1
AATGGC/ATTGCC				1			1
ACCCTG/AGGGTC	1						1
AGCGCC/CGCTGG	5						5
AGGCGC/CCTGCG	1						1
