Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_902807185.1/fasta/hub_GCF_902807185.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              106
Total size of examined sequences (bp):           5794488
Total number of identified SSRs:                 26
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	6
4	1
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	1	1				2
GC	-	-	-	2					2
ACG	-	-	1						1
CAG	-	-	2						2
CCG	-	-	1						1
CTG	-	-	2						2
AGTA	-	1							1
AAAGA	1								1
CAGCG	1								1
CGACG	1								1
GCCAG	1								1
GGCAA								1	1
TCAAC	1								1
ATTGCC	1								1
CCAGCG	1								1
CCGTTG	1								1
GAAGTC	1								1
GATGTT		1							1
GCTCCG	1								1
GGCTCT	1								1
TGAAGA		1							1
TGCGCC	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	3	1				4
ACG/CGT	-	-	1						1
AGC/CTG	-	-	4						4
CCG/CGG	-	-	1						1
AAGT/ACTT	-	1							1
AAAAG/CTTTT	1								1
AACTC/AGTTG	1								1
AAGGC/CCTTG								1	1
ACGCG/CGCGT	1								1
AGCGC/CGCTG	1								1
AGGCC/CCTGG	1								1
AACATC/ATGTTG		1							1
AACGGC/CCGTTG	1								1
AAGATG/ATCTTC		1							1
AAGTCG/ACTTCG	1								1
AATGGC/ATTGCC	1								1
AGAGCC/CTCTGG	1								1
AGCCGG/CCGGCT	1								1
AGCGCC/CGCTGG	1								1
AGGCGC/CCTGCG	1								1
