Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-147/megassr/results/hub_GCF_902807175.1/fasta/hub_GCF_902807175.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           5147203
Total number of identified SSRs:                 15
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	5
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
GC	-	-	-	1		1
CAT	-	-	1			1
CCG	-	-	1			1
CGA	-	-	1			1
TGA	-	-	2			2
ACTGG	1					1
CAGCG	1					1
CGCGG	1					1
ACACCA					1	1
CCATCG		1				1
CGCCAG	1					1
GAAGTC	1					1
GCGCCA	1					1
GCTGCC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	1		1
ACG/CGT	-	-	1			1
ATC/ATG	-	-	3			3
CCG/CGG	-	-	1			1
ACTGG/AGTCC	1					1
AGCGC/CGCTG	1					1
CCGCG/CGCGG	1					1
AACACC/GGTGTT					1	1
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	2					2
AGCGGC/CCGCTG	1					1
ATCGCC/ATGGCG		1				1
