Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-145/megassr/results/hub_GCF_902807155.1/fasta/hub_GCF_902807155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              78
Total size of examined sequences (bp):           5145082
Total number of identified SSRs:                 25
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	3
5	3
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG	-	-	-	1						1
CG	-	-	-	5						5
GC	-	-	-	1	1					2
ACC	-	-	1							1
CCA	-	-		1						1
GGC	-	-	1							1
AGATT	1									1
AGTTG	1									1
GGCGA	1									1
ACATGA				1						1
CCATGA	1									1
CGAAGC									1	1
CGTGTT		1								1
CTGGCG	1									1
GAAGTC	1									1
GATGAA	1									1
GCAGCC	1									1
GCGATG	1									1
GCGCCT	1									1
GCTGGC	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-	1						1
CG/CG	-	-	-	6	1					7
ACC/GGT	-	-	1	1						2
CCG/CGG	-	-	1							1
AACTC/AGTTG	1									1
AATCT/AGATT	1									1
AGGCG/CCTCG	1									1
AACACG/CGTGTT		1								1
AACATG/ATGTTC				1						1
AAGATG/ATCTTC	1									1
AAGCCG/CGGCTT									1	1
AAGTCG/ACTTCG	1									1
ACCATG/ATGGTC	1									1
AGCCGC/CGGCTG	1									1
AGCGCC/CGCTGG	2									2
AGGCGC/CCTGCG	1									1
ATCGCC/ATGGCG	1									1
