Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_902807105.1/fasta/hub_GCF_902807105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              88
Total size of examined sequences (bp):           6836681
Total number of identified SSRs:                 51
Number of SSR containing sequences:              23
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	8
5	13
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	1												1
GC	-	-	-	1												1
TG	-	-	-	1												1
CAC	-	-	2													2
CCG	-	-	1													1
CGC	-	-	1													1
CGG	-	-	1													1
GCG	-	-	1		1											2
GGT	-	-	1													1
ACGGC	1															1
CGCCG	1															1
CGGCG	2															2
GAGCA	1															1
GCGCC	1															1
GCGCG	1															1
GCGGC	3															3
GGAAG		1														1
GGCGA	1															1
GGTGG	1															1
AAGGCC	1															1
ACAGCC															1	1
ACCACG	1															1
AGCGCC	1															1
CAACGC				1												1
CAGGCG	1															1
CCGAGC				1												1
CCTCGG	1															1
CCTGGC	1															1
CGCCAC		1														1
CGCCAG	1															1
CGCCCT	1															1
CGCTGT	1															1
CGGCGC	1															1
CGTCGG			1													1
CGTGAT						1										1
GCAGGC	1															1
GCCCTG	1															1
GCCGTC	1															1
GGCCAT	1															1
GGCCCA	1															1
GGCGCT	1															1
GGCTCG											1					1
GTCAGG	1															1
TCCCTG					1											1
TGACCA							1									1
TGTTCC	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
AC/GT	-	-	-	1												1
CG/CG	-	-	-	2												2
ACC/GGT	-	-	3													3
CCG/CGG	-	-	4		1											5
AAGGG/CCCTT		1														1
ACCCC/GGGGT	1															1
ACGGC/CCGTG	1															1
AGAGC/CTCTG	1															1
AGGCG/CCTCG	1															1
CCGCG/CGCGG	8															8
AACAGG/CCTGTT	1															1
AACGCC/CGTTGG				1												1
AAGGCC/CCTTGG	1															1
ACAGCC/CTGTGG															1	1
ACAGCG/CGCTGT	1															1
ACAGGG/CCCTGT					1											1
ACCACG/CGTGGT	1															1
ACCATG/ATGGTC							1									1
ACCCTG/AGGGTC	1															1
ACCGCC/CGGTGG		1														1
ACGATC/ATCGTG						1										1
ACGCCG/CGGCGT			1													1
ACGGCG/CCGTCG	1															1
AGCCCG/CGGGCT				1							1					2
AGCGCC/CGCTGG	3															3
AGGCCC/CCTGGG	1															1
AGGCCG/CCTCGG	1															1
AGGCGC/CCTGCG	2															2
AGGGCC/CCCTGG	2															2
AGGGCG/CCCTCG	1															1
ATGGCC/ATGGCC	1															1
CCGGCG/CCGGCG	1															1
