Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCF_902807095.1/fasta/hub_GCF_902807095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              108
Total size of examined sequences (bp):           6169961
Total number of identified SSRs:                 51
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  15
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	24
5	7
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	2	2			4
GC	-	-	-	4				4
ACC	-	-	1					1
AGC	-	-		1				1
CAC	-	-	1					1
CAG	-	-	3					3
CCG	-	-	3					3
CGA	-	-	1					1
CGC	-	-	3					3
CGG	-	-	4					4
CTG	-	-	2					2
GCA	-	-	1					1
GCG	-	-	1	1				2
GGC	-	-	1					1
TGG	-	-		1				1
ACGCC	1							1
AGCGC	1							1
ATCCA	1							1
CCTTC	1							1
GCAGC	1							1
GCGCC	1							1
TGTTC	1							1
AACATG							1	1
AGAAAA	1							1
CAGCGC	2							2
CATGAC	1							1
CCAGCA	1							1
GAAGTC	1							1
GCTGGC	1							1
GTCGGA	2							2
GTTGAA	1							1
TCCGAG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	6	2			8
ACC/GGT	-	-	2	1				3
ACG/CGT	-	-	1					1
AGC/CTG	-	-	6	1				7
CCG/CGG	-	-	12	1				13
AACAG/CTGTT	1							1
AAGGG/CCCTT	1							1
AATCC/ATTGG	1							1
ACGCC/CGTGG	1							1
AGCGC/CGCTG	2							2
CCGCG/CGCGG	1							1
AAAAAG/CTTTTT	1							1
AACATG/ATGTTC							1	1
AACTTC/AAGTTG	1							1
AAGTCG/ACTTCG	1							1
ACCAGC/CTGGTG	1							1
ACCATG/ATGGTC	1							1
ACTCCG/AGTCGG	2							2
ACTCGG/AGTCCG	1							1
AGCGCC/CGCTGG	3							3
