Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-107/megassr/results/hub_GCF_900097955.1/fasta/hub_GCF_900097955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              28
Total size of examined sequences (bp):           2677652
Total number of identified SSRs:                 14
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
4	1
5	8
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	3	3
ATT	-	-	1		1
TTAT	-	1			1
AAATC	1				1
AATTC	1				1
ATAAT	1				1
CAAAA	1				1
TAAAA	1				1
TAATC	1				1
TATAT	1				1
TTTTA	1				1
TTTGAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	3	3
AAT/ATT	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	1				1
AAAAT/ATTTT	2				2
AAATC/ATTTG	1				1
AATAT/ATATT	2				2
AATCT/AGATT	1				1
AATTC/AATTG	1				1
AAAATC/ATTTTG	1				1
