Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_900092405.1/fasta/hub_GCF_900092405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           3562813
Total number of identified SSRs:                 56
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	31
5	9
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	1	3
GC	-	-	-	7		7
ATG	-	-	1			1
CAG	-	-	1			1
CCG	-	-	1			1
CGC	-	-	3			3
CGG	-	-	2			2
GCC	-	-	12			12
GCG	-	-		1		1
GGC	-	-	6	1		7
GGT	-	-	1			1
TGG	-	-	2			2
ATATT	1					1
CCATG	1					1
CCGGC		1				1
CGCCG	1					1
CGCGC	1					1
CGCGG	1					1
CGTGC	1					1
GCCGG	1					1
GGGCA	1					1
ATGCCG	1					1
CGACGG	1					1
CGATGC	1					1
GCGCCC	1					1
GCGCCT	1					1
GGCACT		1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	9	1	10
ACC/GGT	-	-	3			3
AGC/CTG	-	-	1			1
ATC/ATG	-	-	1			1
CCG/CGG	-	-	24	2		26
AATAT/ATATT	1					1
ACGGC/CCGTG	1					1
AGGGC/CCCTG	1					1
ATGCC/ATGGC	1					1
CCCGG/CCGGG	1	1				2
CCGCG/CGCGG	3					3
ACGGCG/CCGTCG	1					1
ACTGGC/AGTGCC		1				1
AGGCGC/CCTGCG	1					1
ATCGGC/ATGCCG	2					2
CCCGCG/CGCGGG	1					1
