Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCF_060989125.1/fasta/hub_GCF_060989125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6279544
Total number of identified SSRs:                 27
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	1
5	8
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG	-	-	-	1													1
GGA	-	-		1													1
TGGC	-	1															1
CCGCG	1																1
CCTGA		1															1
CGCCG	1																1
GCCAG	1																1
GCCGC	1																1
GCGCC	1																1
GGGCC	1																1
GGGTG	1																1
AGAGCA						1											1
CAGCAA	1																1
CGCTGG	1																1
GACCTT	1																1
GCCAGG	1																1
GCCGAA	1																1
GGCCAT	1																1
GGTGCA	1																1
GTCGAG		1															1
TCCTGG	1																1
TCGCCG	1																1
TGGCTT					1												1
TGTTCC	1																1
TTGACC		1															1
TTGATC	1																1
TTGCTT																1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
CG/CG	-	-	-	1													1
AGG/CCT	-	-		1													1
AGCC/CTGG	-	1															1
ACCCC/GGGGT	1																1
ACCTG/AGGTC		1															1
AGGCC/CCTGG	1																1
CCCGG/CCGGG	1																1
CCGCG/CGCGG	4																4
AAAAGC/CTTTTG																1	1
AAAGCC/CTTTGG					1												1
AACAGC/CTGTTG	1																1
AACAGG/CCTGTT	1																1
AAGAGC/CTCTTG						1											1
AAGATC/ATCTTG	1																1
AAGCCG/CGGCTT	1																1
AAGGTC/ACCTTG	1	1															2
ACCAGG/CCTGGT	1																1
ACCTCG/AGGTCG		1															1
ACCTGC/AGGTGC	1																1
ACGGCG/CCGTCG	1																1
AGCGCC/CGCTGG	1																1
AGGGCC/CCCTGG	1																1
ATGGCC/ATGGCC	1																1
