Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_060696945.1/fasta/hub_GCF_060696945.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              71
Total size of examined sequences (bp):           5351499
Total number of identified SSRs:                 40
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	5
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1		2
CG	-	-	-	2	1																3
GC	-	-	-	1	1																2
CAG	-	-	1																		1
CCG	-	-	3																		3
CGC	-	-	1																		1
CGG	-	-	3																		3
CTG	-	-	2																		2
GAC	-	-	1																		1
GCG	-	-	2																		2
GGC	-	-	1	1																	2
GGT	-	-		1																	1
TCG	-	-	1																		1
TGG	-	-	1																		1
AATAA	1																				1
ATAAA	1																				1
CAGCC			1																		1
CCCGG	1																				1
CCGCG	1																				1
CGTGG	1																				1
GGCGC	1																				1
CACCAG	1																				1
CCGGAG		1																			1
CGGCCA	1																				1
GAAGTC	1																				1
GCAGCC	1																				1
GTGGAA	1																				1
TCTTCG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1	1	3
CG/CG	-	-	-	3	2																5
ACC/GGT	-	-	1	1																	2
ACG/CGT	-	-	2																		2
AGC/CTG	-	-	3																		3
CCG/CGG	-	-	10	1																	11
AAAAT/ATTTT	2																				2
ACGCC/CGTGG	1																				1
AGCCC/CTGGG			1																		1
CCCGG/CCGGG	1																				1
CCGCG/CGCGG	2																				2
AAGACG/CGTCTT	1																				1
AAGTCG/ACTTCG	1																				1
AAGTGG/ACTTCC	1																				1
ACCAGC/CTGGTG	1																				1
ACGGCC/CCGTGG	1																				1
AGCCGC/CGGCTG	1																				1
AGCCGG/CCGGCT		1																			1
