Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-139/megassr/results/hub_GCF_060696925.1/fasta/hub_GCF_060696925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              129
Total size of examined sequences (bp):           5355961
Total number of identified SSRs:                 49
Number of SSR containing sequences:              36
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	11
2	4
3	18
5	9
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1					1	2	2							1																																									1	8
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1				1			1																																														3
CG	-	-	-	2	1																																																																						3
GC	-	-	-	1																																																																							1
CCG	-	-	3																																																																								3
CGC	-	-	1																																																																								1
CGG	-	-	2																																																																								2
CTG	-	-	3																																																																								3
GCC	-	-	2	1																																																																							3
GCG	-	-	1																																																																								1
GGC	-	-	1																																																																								1
GGT	-	-		1																																																																							1
GTC	-	-	1																																																																								1
TCG	-	-	1																																																																								1
TGG	-	-	1																																																																								1
ATAAA	1																																																																										1
CCACG	1																																																																										1
CCCCG	1																																																																										1
CCCGG	1																																																																										1
CCGCG	1																																																																										1
CTGCG	1																																																																										1
GCGCC	1																																																																										1
GCTGG			1																																																																								1
TTATT	1																																																																										1
CACCAG	1																																																																										1
CCGGAG		1																																																																									1
CGGCCA	1																																																																										1
GAAGTC	1																																																																										1
GACGAA	1																																																																										1
GCAGCC	1																																																																										1
TTCCAC	1																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1			1		1	2	3			1				1																																									1	11
CG/CG	-	-	-	3	1																																																																						4
ACC/GGT	-	-	1	1																																																																							2
ACG/CGT	-	-	2																																																																								2
AGC/CTG	-	-	3																																																																								3
CCG/CGG	-	-	10	1																																																																							11
AAAAT/ATTTT	2																																																																										2
ACGCC/CGTGG	1																																																																										1
AGCCC/CTGGG			1																																																																								1
AGCGC/CGCTG	1																																																																										1
CCCCG/CGGGG	1																																																																										1
CCCGG/CCGGG	1																																																																										1
CCGCG/CGCGG	2																																																																										2
AAGACG/CGTCTT	1																																																																										1
AAGTCG/ACTTCG	1																																																																										1
AAGTGG/ACTTCC	1																																																																										1
ACCAGC/CTGGTG	1																																																																										1
ACGGCC/CCGTGG	1																																																																										1
AGCCGC/CGGCTG	1																																																																										1
AGCCGG/CCGGCT		1																																																																									1
