Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-137/megassr/results/hub_GCF_060696815.1/fasta/hub_GCF_060696815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              68
Total size of examined sequences (bp):           5616086
Total number of identified SSRs:                 53
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	18
4	1
5	8
6	19

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2	2	4
GC	-	-	-	3		3
CAG	-	-	1			1
CCG	-	-	6			6
CGA	-	-	1			1
CGC	-	-	1	1		2
CTG	-	-	1			1
GAC	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	1			1
GGC	-	-	1			1
GGT	-	-	1			1
CTGG	-	1				1
CCACG	1					1
CCGCG	1					1
CGCCG	1					1
CGCGC	1					1
GCCCG	1					1
GCGCG	1					1
GGCGC	1					1
GGGGA	1					1
ACGCCC	1					1
AGCTGC	1					1
ATGGTC	1					1
CCCTGA	1					1
CCGACG		1				1
CGACTT	1					1
CTGGTG	1					1
GAAGAC	1					1
GAATCC	1					1
GAGCTG	1					1
GAGTCG		1				1
GCCTGG	1					1
GCGAAA	1					1
GCGCCA	1					1
GCGCTG	1					1
GCTCCG		1				1
GGCGAT	1					1
GTGGAA	1					1
TCTTCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5	2	7
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	3			3
CCG/CGG	-	-	10	2		12
AGCC/CTGG	-	1				1
ACGCC/CGTGG	1					1
AGGGG/CCCCT	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	5					5
AAAGCG/CGCTTT	1					1
AAGACG/CGTCTT	2					2
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
AATCCG/ATTCGG	1					1
ACCAGC/CTGGTG	1					1
ACCATG/ATGGTC	1					1
ACCCTG/AGGGTC	1					1
ACGCCC/CGTGGG	1					1
ACGCCG/CGGCGT		1				1
ACTCCG/AGTCGG		1				1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	2					2
AGCTCC/AGCTGG	1					1
AGCTGC/AGCTGC	1					1
AGGCCC/CCTGGG	1					1
ATCGCC/ATGGCG	1					1
