Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-144/megassr/results/hub_GCF_060696765.1/fasta/hub_GCF_060696765.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              89
Total size of examined sequences (bp):           4820224
Total number of identified SSRs:                 20
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	10
5	3
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	1	1
ACG	-	-	1		1
ATC	-	-	1		1
CAC	-	-	1		1
CGG	-	-	1		1
CTG	-	-	1		1
GCA	-	-	1		1
GCC	-	-	1		1
GCG	-	-	1		1
GGC	-	-	1		1
GTT	-	-	1		1
ACGTC	1				1
AGTTG	1				1
CAGCC	1				1
ACCTGA	1				1
CAGCGC	1				1
GAAGTC	1				1
GCGCCA	1				1
GGCTTC	1				1
GGTGAA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	1	1
AAC/GTT	-	-	1		1
ACC/GGT	-	-	1		1
ACG/CGT	-	-	1		1
AGC/CTG	-	-	2		2
ATC/ATG	-	-	1		1
CCG/CGG	-	-	4		4
AACTC/AGTTG	1				1
ACGTC/ACGTG	1				1
AGCCC/CTGGG	1				1
AACCTG/AGGTTC	1				1
AAGCCG/CGGCTT	1				1
AAGGTG/ACCTTC	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	2				2
