Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_060696685.1/fasta/hub_GCF_060696685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              69
Total size of examined sequences (bp):           5350116
Total number of identified SSRs:                 39
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					2	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1		1
CG	-	-	-	2	1																		3
GC	-	-	-	1																			1
CAG	-	-	1																				1
CCA	-	-		1																			1
CCG	-	-	3																				3
CGG	-	-	2																				2
CTG	-	-	2																				2
GAC	-	-	1																				1
GCC	-	-	2	1																			3
GCG	-	-	1																				1
GGC	-	-	2																				2
GTC	-	-	1																				1
TGG	-	-	1																				1
CAGCC			1																				1
CCGCG	1																						1
CGTGG	1																						1
GCCGG	1																						1
GCGCC	1																						1
TTATT	1																						1
TTTAT	1																						1
CACCAG	1																						1
CCGGAG		1																					1
CGGCCA	1																						1
GAAGTC	1																						1
GCAGCC	1																						1
TCTTCG	1																						1
TTCCAC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	2	3
CG/CG	-	-	-	3	1																		4
ACC/GGT	-	-	1	1																			2
ACG/CGT	-	-	2																				2
AGC/CTG	-	-	3																				3
CCG/CGG	-	-	10	1																			11
AAAAT/ATTTT	2																						2
ACGCC/CGTGG	1																						1
AGCCC/CTGGG			1																				1
CCCGG/CCGGG	1																						1
CCGCG/CGCGG	2																						2
AAGACG/CGTCTT	1																						1
AAGTCG/ACTTCG	1																						1
AAGTGG/ACTTCC	1																						1
ACCAGC/CTGGTG	1																						1
ACGGCC/CCGTGG	1																						1
AGCCGC/CGGCTG	1																						1
AGCCGG/CCGGCT		1																					1
