Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-145/megassr/results/hub_GCF_060696585.1/fasta/hub_GCF_060696585.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              160
Total size of examined sequences (bp):           5372740
Total number of identified SSRs:                 74
Number of SSR containing sequences:              54
Number of sequences containing more than 1 SSR:  14
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	35
2	4
3	19
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	3	2				2	1	1	2		2		1		1																	1				1																							1												20
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3					3		1	1		1		1							2															1																																					2	15
CG	-	-	-	2	1																																																																																					3
GC	-	-	-	1																																																																																						1
CAG	-	-	1																																																																																							1
CCG	-	-	4																																																																																							4
CGC	-	-	1	1																																																																																						2
CGG	-	-	2																																																																																							2
CTG	-	-	3																																																																																							3
GAC	-	-	1																																																																																							1
GCC	-	-	1																																																																																							1
GCG	-	-	1																																																																																							1
GGC	-	-	1	1																																																																																						2
GGT	-	-	1																																																																																							1
TCG	-	-	1																																																																																							1
AATAA	1																																																																																									1
CCACG	1																																																																																									1
CCGCG	1																																																																																									1
CGCGC	1																																																																																									1
GCCGG	1																																																																																									1
GGCGC	1																																																																																									1
TTTAT	1																																																																																									1
CCGGAG		1																																																																																								1
CGACTT	1																																																																																									1
CTGGTG	1																																																																																									1
GACGAA	1																																																																																									1
GCAGGA	1																																																																																									1
GCAGGG	1																																																																																									1
GTGGAA	1																																																																																									1
TCTTCC		1																																																																																								1
TGCCGC		1																																																																																								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2	3	2		3		3	2	1	3		3		1		1			2														1	1			1																							1											2	35
CG/CG	-	-	-	3	1																																																																																					4
ACC/GGT	-	-	1																																																																																							1
ACG/CGT	-	-	2																																																																																							2
AGC/CTG	-	-	4																																																																																							4
CCG/CGG	-	-	10	2																																																																																						12
AAAAT/ATTTT	2																																																																																									2
ACGCC/CGTGG	1																																																																																									1
CCCGG/CCGGG	1																																																																																									1
CCGCG/CGCGG	3																																																																																									3
AAGACG/CGTCTT	1																																																																																									1
AAGAGG/CCTCTT		1																																																																																								1
AAGTCG/ACTTCG	1																																																																																									1
AAGTGG/ACTTCC	1																																																																																									1
ACCAGC/CTGGTG	1																																																																																									1
AGCAGG/CCTGCT	1																																																																																									1
AGCCGG/CCGGCT		1																																																																																								1
AGCGGC/CCGCTG		1																																																																																								1
AGGGGC/CCCCTG	1																																																																																									1
