Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-131/megassr/results/hub_GCF_060696385.1/fasta/hub_GCF_060696385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              77
Total size of examined sequences (bp):           5103617
Total number of identified SSRs:                 45
Number of SSR containing sequences:              27
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	9
3	20
5	5
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																											1	1
CG	-	-	-	5	2																																								7
GC	-	-	-	2																																									2
CCG	-	-	1																																										1
CGA	-	-	1																																										1
CGC	-	-		2																																									2
CGG	-	-	3																																										3
CTG	-	-	1																																										1
GAC	-	-	1																																										1
GCA	-	-	3	1																																									4
GCC	-	-	3																																										3
GCG	-	-	1																																										1
GCT	-	-		1																																									1
GGC	-	-	1	1																																									2
CGCGG	2																																												2
CGGGC	1																																												1
GCGCC	1																																												1
TTCCC	1																																												1
AGCGGG	1																																												1
CAGCAA	1																																												1
CCAGCA		1	1																																										2
CCCCCG	1																																												1
CGACTT	1																																												1
GACGAA	1																																												1
GCGCTG	1																																												1
GCTCCG		1																																											1
TTCCAC	1																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																											1	1
CG/CG	-	-	-	7	2																																								9
ACG/CGT	-	-	2																																										2
AGC/CTG	-	-	4	2																																									6
CCG/CGG	-	-	9	3																																									12
AAGGG/CCCTT	1																																												1
CCCGG/CCGGG	1																																												1
CCGCG/CGCGG	3																																												3
AACAGC/CTGTTG	1																																												1
AAGACG/CGTCTT	1																																												1
AAGTCG/ACTTCG	1																																												1
AAGTGG/ACTTCC	1																																												1
ACCAGC/CTGGTG		1	1																																										2
AGCCGG/CCGGCT		1																																											1
AGCGCC/CGCTGG	1																																												1
AGCGGG/CCCGCT	1																																												1
CCCCCG/CGGGGG	1																																												1
