Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-130/megassr/results/hub_GCF_060696345.1/fasta/hub_GCF_060696345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              113
Total size of examined sequences (bp):           5606661
Total number of identified SSRs:                 32
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	15
5	7
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG	-	-	-	2	1																	3
GC	-	-	-	1																		1
CAG	-	-	2																			2
CCA	-	-	1																			1
CCG	-	-	1																			1
CGC	-	-	1																			1
CGG	-	-	3																			3
GAC	-	-	1																			1
GCA	-	-	1																			1
GCC	-	-	1																			1
GCG	-	-	1																			1
GGC	-	-	1	1																		2
TCG	-	-	1																			1
AATAA	1																					1
AGATA	1																					1
ATAAA	1																					1
CCACG	1																					1
CCCGG	1																					1
CCGCG	1																					1
GGCGC	1																					1
CACCAG	1																					1
GAAGTC	1																					1
GCTCCG		1																				1
GTGGAA	1																					1
TCTTCG	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
CG/CG	-	-	-	3	1																	4
ACC/GGT	-	-	1																			1
ACG/CGT	-	-	2																			2
AGC/CTG	-	-	3																			3
CCG/CGG	-	-	8	1																		9
AAAAT/ATTTT	2																					2
AAGAT/ATCTT	1																					1
ACGCC/CGTGG	1																					1
CCCGG/CCGGG	1																					1
CCGCG/CGCGG	2																					2
AAGACG/CGTCTT	1																					1
AAGTCG/ACTTCG	1																					1
AAGTGG/ACTTCC	1																					1
ACCAGC/CTGGTG	1																					1
AGCCGG/CCGGCT		1																				1
