Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_060695785.1/fasta/hub_GCF_060695785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              110
Total size of examined sequences (bp):           5356809
Total number of identified SSRs:                 44
Number of SSR containing sequences:              31
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	8
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1															1
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2														2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1				1	1		1							1	5
CG	-	-	-	2	1																													3
GC	-	-	-	1																														1
CAG	-	-	2																															2
CCA	-	-	1	1																														2
CCG	-	-	2																															2
CGC	-	-	2																															2
CGG	-	-	4																															4
CTG	-	-	1																															1
GAC	-	-	1																															1
GCC	-	-	1	1																														2
GGC	-	-	1																															1
GTC	-	-	1																															1
AATAA	1																																	1
CCCGG	1																																	1
CCGCG	1																																	1
CGTGG	1																																	1
GCTGG			1																															1
GGCGC	1																																	1
TTTAT	1																																	1
CCGGAG		1																																1
CGTGGC	1																																	1
CTGGTG	1																																	1
GAAGTC	1																																	1
GTGGAA	1																																	1
TCTTCG	1																																	1
TGCGGC	1																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1															1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	2			1	1		1							1	7
CG/CG	-	-	-	3	1																													4
ACC/GGT	-	-	1	1																														2
ACG/CGT	-	-	2																															2
AGC/CTG	-	-	3																															3
CCG/CGG	-	-	10	1																														11
AAAAT/ATTTT	2																																	2
ACGCC/CGTGG	1																																	1
AGCCC/CTGGG			1																															1
CCCGG/CCGGG	1																																	1
CCGCG/CGCGG	2																																	2
AAGACG/CGTCTT	1																																	1
AAGTCG/ACTTCG	1																																	1
AAGTGG/ACTTCC	1																																	1
ACCAGC/CTGGTG	1																																	1
ACGGCC/CCGTGG	1																																	1
AGCCGC/CGGCTG	1																																	1
AGCCGG/CCGGCT		1																																1
