Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_060695625.1/fasta/hub_GCF_060695625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              115
Total size of examined sequences (bp):           5361728
Total number of identified SSRs:                 53
Number of SSR containing sequences:              34
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	17
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1				1	1								1																											1	5
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3	2		1				1	1				1					1				1															1					12
CG	-	-	-	2	1																																																						3
GC	-	-	-	1																																																							1
CAG	-	-	1																																																								1
CCG	-	-	4																																																								4
CGC	-	-	2																																																								2
CGG	-	-	2																																																								2
CTG	-	-	2																																																								2
GAC	-	-	1																																																								1
GCC	-	-	2	1																																																							3
GGT	-	-		1																																																							1
GTC	-	-	1																																																								1
TGG	-	-	1																																																								1
AATAA	1																																																										1
ATAAA	1																																																										1
CCACG	1																																																										1
CCCGG	1																																																										1
CCGCG	1																																																										1
GCTGG			1																																																								1
GGCGC	1																																																										1
CACCAG	1																																																										1
CGGCCA	1																																																										1
GAAGTC	1																																																										1
GACGAA	1																																																										1
GCTCCG		1																																																									1
GTGGAA	1																																																										1
TGCGGC	1																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	4	2		1	1	1		1	1				1	1				1				1															1				1	17
CG/CG	-	-	-	3	1																																																						4
ACC/GGT	-	-	1	1																																																							2
ACG/CGT	-	-	2																																																								2
AGC/CTG	-	-	3																																																								3
CCG/CGG	-	-	10	1																																																							11
AAAAT/ATTTT	2																																																										2
ACGCC/CGTGG	1																																																										1
AGCCC/CTGGG			1																																																								1
CCCGG/CCGGG	1																																																										1
CCGCG/CGCGG	2																																																										2
AAGACG/CGTCTT	1																																																										1
AAGTCG/ACTTCG	1																																																										1
AAGTGG/ACTTCC	1																																																										1
ACCAGC/CTGGTG	1																																																										1
ACGGCC/CCGTGG	1																																																										1
AGCCGC/CGGCTG	1																																																										1
AGCCGG/CCGGCT		1																																																									1
