Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_060695445.1/fasta/hub_GCF_060695445.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              63
Total size of examined sequences (bp):           5344146
Total number of identified SSRs:                 39
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1									1	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1										1
CG	-	-	-	2	1																									3
GC	-	-	-	1																										1
CAG	-	-	1																											1
CCA	-	-		1																										1
CCG	-	-	4																											4
CGC	-	-	1																											1
CGG	-	-	3																											3
CTG	-	-	1																											1
GAC	-	-	1																											1
GCA	-	-	1																											1
GCC	-	-	1	1																										2
GCG	-	-	1																											1
GTC	-	-	1																											1
TGG	-	-	1																											1
ATAAA	1																													1
CAGCC			1																											1
CCACG	1																													1
CGCGG	1																													1
GCCGG	1																													1
GCGCC	1																													1
TTATT	1																													1
CACCAG	1																													1
CGACTT	1																													1
CGTGGC	1																													1
GACGAA	1																													1
GCAGCC	1																													1
GCTCCG		1																												1
TTCCAC	1																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			2									1	3
CG/CG	-	-	-	3	1																									4
ACC/GGT	-	-	1	1																										2
ACG/CGT	-	-	2																											2
AGC/CTG	-	-	3																											3
CCG/CGG	-	-	10	1																										11
AAAAT/ATTTT	2																													2
ACGCC/CGTGG	1																													1
AGCCC/CTGGG			1																											1
CCCGG/CCGGG	1																													1
CCGCG/CGCGG	2																													2
AAGACG/CGTCTT	1																													1
AAGTCG/ACTTCG	1																													1
AAGTGG/ACTTCC	1																													1
ACCAGC/CTGGTG	1																													1
ACGGCC/CCGTGG	1																													1
AGCCGC/CGGCTG	1																													1
AGCCGG/CCGGCT		1																												1
