Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-133/megassr/results/hub_GCF_060695405.1/fasta/hub_GCF_060695405.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              76
Total size of examined sequences (bp):           5352732
Total number of identified SSRs:                 37
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG	-	-	-	2	1															3
GC	-	-	-	1																1
CAG	-	-	1																	1
CCA	-	-		1																1
CCG	-	-	3																	3
CGC	-	-	2																	2
CGG	-	-	2																	2
CTG	-	-	1																	1
GAC	-	-	1																	1
GCA	-	-	1																	1
GCC	-	-	2	1																3
GGC	-	-	1																	1
GTC	-	-	1																	1
TGG	-	-	1																	1
ATAAA	1																			1
CCGCG	1																			1
CGTGG	1																			1
GCCGG	1																			1
GCGCC	1																			1
GCTGG			1																	1
TTATT	1																			1
CACCAG	1																			1
CCGGAG		1																		1
CGGCCA	1																			1
GAAGTC	1																			1
TCTTCG	1																			1
TGCGGC	1																			1
TTCCAC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1	1
CG/CG	-	-	-	3	1															4
ACC/GGT	-	-	1	1																2
ACG/CGT	-	-	2																	2
AGC/CTG	-	-	3																	3
CCG/CGG	-	-	10	1																11
AAAAT/ATTTT	2																			2
ACGCC/CGTGG	1																			1
AGCCC/CTGGG			1																	1
CCCGG/CCGGG	1																			1
CCGCG/CGCGG	2																			2
AAGACG/CGTCTT	1																			1
AAGTCG/ACTTCG	1																			1
AAGTGG/ACTTCC	1																			1
ACCAGC/CTGGTG	1																			1
ACGGCC/CCGTGG	1																			1
AGCCGC/CGGCTG	1																			1
AGCCGG/CCGGCT		1																		1
