Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-117/megassr/results/hub_GCF_060695385.1/fasta/hub_GCF_060695385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           5349730
Total number of identified SSRs:                 37
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	18
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																				1	1
CG	-	-	-	2	1																																	3
GC	-	-	-	1																																		1
CAG	-	-	1																																			1
CCA	-	-	1																																			1
CCG	-	-	4																																			4
CGG	-	-	3																																			3
CTG	-	-	2																																			2
GAC	-	-	1																																			1
GCG	-	-	2																																			2
GGC	-	-	1	1																																		2
GGT	-	-		1																																		1
TCG	-	-	1																																			1
CAGCC			1																																			1
CGCGG	1																																					1
CGTGG	1																																					1
GCCGG	1																																					1
GCGCC	1																																					1
TTATT	1																																					1
TTTAT	1																																					1
CCGGAG		1																																				1
CGACTT	1																																					1
CGTGGC	1																																					1
CTGGTG	1																																					1
GACGAA	1																																					1
GCAGCC	1																																					1
TTCCAC	1																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																				1	1
CG/CG	-	-	-	3	1																																	4
ACC/GGT	-	-	1	1																																		2
ACG/CGT	-	-	2																																			2
AGC/CTG	-	-	3																																			3
CCG/CGG	-	-	10	1																																		11
AAAAT/ATTTT	2																																					2
ACGCC/CGTGG	1																																					1
AGCCC/CTGGG			1																																			1
CCCGG/CCGGG	1																																					1
CCGCG/CGCGG	2																																					2
AAGACG/CGTCTT	1																																					1
AAGTCG/ACTTCG	1																																					1
AAGTGG/ACTTCC	1																																					1
ACCAGC/CTGGTG	1																																					1
ACGGCC/CCGTGG	1																																					1
AGCCGC/CGGCTG	1																																					1
AGCCGG/CCGGCT		1																																				1
