Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-112/megassr/results/hub_GCF_060695095.1/fasta/hub_GCF_060695095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              85
Total size of examined sequences (bp):           5582362
Total number of identified SSRs:                 40
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	4
3	16
5	6
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1										2	3
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-								1				1
CG	-	-	-	2	1																								3
GC	-	-	-	1																									1
CCG	-	-	5																										5
CGG	-	-	1																										1
CTG	-	-	1																										1
GCA	-	-	1																										1
GCC	-	-	3																										3
GCG	-	-	1																										1
GGC	-	-	1	1																									2
GGT	-	-	1																										1
TCG	-	-	1																										1
AATAA	1																												1
ATAAA	1																												1
CCCGG	1																												1
CCGCG	1																												1
CGTGG	1																												1
GGCGC	1																												1
CCAGCC	1																												1
CCATCA	1																												1
CCGGAG			1																										1
CCGGCA	1																												1
CGACTT	1																												1
CGGTAT	1																												1
CTGGCC	1																												1
CTGGTG	1																												1
GTGGAA	1																												1
TCTTCG	1																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1							1			2	4
CG/CG	-	-	-	3	1																								4
ACC/GGT	-	-	1																										1
ACG/CGT	-	-	1																										1
AGC/CTG	-	-	2																										2
CCG/CGG	-	-	11	1																									12
AAAAT/ATTTT	2																												2
ACGCC/CGTGG	1																												1
CCCGG/CCGGG	1																												1
CCGCG/CGCGG	2																												2
AAGACG/CGTCTT	1																												1
AAGTCG/ACTTCG	1																												1
AAGTGG/ACTTCC	1																												1
ACCAGC/CTGGTG	1																												1
ACCATC/ATGGTG	1																												1
ACCGAT/ATCGGT	1																												1
ACCGGC/CCGGTG	1																												1
AGCCCC/CTGGGG	1																												1
AGCCGG/CCGGCT			1																										1
AGGGCC/CCCTGG	1																												1
