Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCF_060694905.1/fasta/hub_GCF_060694905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              97
Total size of examined sequences (bp):           5576375
Total number of identified SSRs:                 46
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	5
3	19
5	7
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				1	1
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1		1
CG	-	-	-	3	1																	4
GC	-	-	-	1																		1
CAG	-	-	1																			1
CCG	-	-	5																			5
CGC	-	-	1																			1
CGG	-	-	2																			2
CTG	-	-	2																			2
GAC	-	-	1																			1
GCA	-	-	1																			1
GCC	-	-		1																		1
GCG	-	-	2																			2
GGC	-	-	1																			1
GGT	-	-	1																			1
GTC	-	-	1																			1
CCACG	1																					1
CCGCG	1																					1
GCCCG	1																					1
GCGCC	1																					1
GGCGC	1																					1
TTATT	1																					1
TTTAT	1																					1
CGGCCG	1																					1
CGGTAT	1																					1
CTGGTG	1																					1
GAAGTC	1																					1
GAGTCG	3																					3
GCAGGA			1																			1
GCTCCG		1																				1
GTCGGA	1																					1
TCTTCG	1																					1
TGGTGA	1																					1
TTCCAC	1																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1	2
CG/CG	-	-	-	4	1																	5
ACC/GGT	-	-	1																			1
ACG/CGT	-	-	2																			2
AGC/CTG	-	-	4																			4
CCG/CGG	-	-	11	1																		12
AAAAT/ATTTT	2																					2
ACGCC/CGTGG	1																					1
CCCGG/CCGGG	1																					1
CCGCG/CGCGG	3																					3
AAGACG/CGTCTT	1																					1
AAGTCG/ACTTCG	1																					1
AAGTGG/ACTTCC	1																					1
ACCAGC/CTGGTG	1																					1
ACCATC/ATGGTG	1																					1
ACCGAT/ATCGGT	1																					1
ACTCCG/AGTCGG	4																					4
AGCAGG/CCTGCT			1																			1
AGCCGG/CCGGCT		1																				1
CCGCGG/CCGCGG	1																					1
