Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-107/megassr/results/hub_GCF_060694785.1/fasta/hub_GCF_060694785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              165
Total size of examined sequences (bp):           5371041
Total number of identified SSRs:                 68
Number of SSR containing sequences:              49
Number of sequences containing more than 1 SSR:  16
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	29
2	4
3	18
5	8
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		2	2		1		1			1			1																					1														1	10
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	3	1					2				1	1	1		1										1															1								18
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																																												1
CG	-	-	-	2	1																																																													3
GC	-	-	-	1																																																														1
CCG	-	-	4																																																															4
CGG	-	-	1	1																																																														2
CTG	-	-	2																																																															2
GCA	-	-	1																																																															1
GCC	-	-	1																																																															1
GCG	-	-	1																																																															1
GCT	-	-	1																																																															1
GGC	-	-	2	1																																																														3
GGT	-	-	1																																																															1
GTC	-	-	1																																																															1
TCG	-	-	1																																																															1
ATAAA	1																																																																	1
CCACG	1																																																																	1
CCCGG	1																																																																	1
CCGCG	1																																																																	1
CGCGC	1																																																																	1
CGGCG		1																																																																1
GCGCC	1																																																																	1
TTATT	1																																																																	1
AGAGGA		1																																																																1
CACCAG	1																																																																	1
CCCTGC	1																																																																	1
CGACTT	1																																																																	1
GCAGGA	1																																																																	1
GCTCCG		1																																																																1
TCTTCG	1																																																																	1
TGCCGC		1																																																																1
TTCCAC	1																																																																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1																																												1
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	6	5	3		1		1	2		1		1	2	1		1										1								1							1							1	28
CG/CG	-	-	-	3	1																																																													4
ACC/GGT	-	-	1																																																															1
ACG/CGT	-	-	2																																																															2
AGC/CTG	-	-	4																																																															4
CCG/CGG	-	-	9	2																																																														11
AAAAT/ATTTT	2																																																																	2
ACGCC/CGTGG	1																																																																	1
CCCGG/CCGGG	1																																																																	1
CCGCG/CGCGG	3	1																																																																4
AAGACG/CGTCTT	1																																																																	1
AAGAGG/CCTCTT		1																																																																1
AAGTCG/ACTTCG	1																																																																	1
AAGTGG/ACTTCC	1																																																																	1
ACCAGC/CTGGTG	1																																																																	1
AGCAGG/CCTGCT	1																																																																	1
AGCCGG/CCGGCT		1																																																																1
AGCGGC/CCGCTG		1																																																																1
AGGGGC/CCCCTG	1																																																																	1
