Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-129/megassr/results/hub_GCF_060694605.1/fasta/hub_GCF_060694605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              106
Total size of examined sequences (bp):           5379030
Total number of identified SSRs:                 66
Number of SSR containing sequences:              32
Number of sequences containing more than 1 SSR:  19
Number of SSRs present in compound formation:    7


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	28
2	5
3	18
5	8
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	5	1	1		1	1			1	1		1				1							1						1	1	16
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	3				1	1	2		2				1		1								1								12
CG	-	-	-	3	1																																											4
GC	-	-	-	1																																												1
CAG	-	-	1																																													1
CCG	-	-	3																																													3
CGC	-	-		1																																												1
CGG	-	-	3																																													3
CTG	-	-	2																																													2
GAC	-	-	1																																													1
GAT	-	-	1																																													1
GCC	-	-	1	1																																												2
GCG	-	-	2																																													2
GGC	-	-	1																																													1
GGT	-	-	1																																													1
ATAAA	1																																															1
CCACG	1																																															1
CCCGG	1																																															1
CGCGG	1																																															1
CGGCG	1																																															1
GCGCC	1																																															1
GGAAG	1																																															1
TTATT	1																																															1
CTGGTG	1																																															1
GAAGTC	1																																															1
GCTCCG		1																																														1
GGCCAG	1																																															1
GGGGCT	1																																															1
TCTTCG	1																																															1
TTCCAC	1																																															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	8	1	1		2	2	2		3	1		1	1		1	1							2						1	1	28
CG/CG	-	-	-	4	1																																											5
ACC/GGT	-	-	1																																													1
ACG/CGT	-	-	1																																													1
AGC/CTG	-	-	3																																													3
ATC/ATG	-	-	1																																													1
CCG/CGG	-	-	10	2																																												12
AAAAT/ATTTT	2																																															2
AAGGG/CCCTT	1																																															1
ACGCC/CGTGG	1																																															1
CCCGG/CCGGG	1																																															1
CCGCG/CGCGG	3																																															3
AAGACG/CGTCTT	1																																															1
AAGTCG/ACTTCG	1																																															1
AAGTGG/ACTTCC	1																																															1
ACCAGC/CTGGTG	1																																															1
AGCCCC/CTGGGG	1																																															1
AGCCGG/CCGGCT		1																																														1
AGGGCC/CCCTGG	1																																															1
