Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_060694525.1/fasta/hub_GCF_060694525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              64
Total size of examined sequences (bp):           4981125
Total number of identified SSRs:                 24
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	10
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	1												1
GC	-	-	-	2												2
ACG	-	-		1												1
CAG	-	-	1													1
CCA	-	-	1													1
CCG	-	-	1													1
CGG	-	-	2													2
GCC	-	-	1													1
GCG	-	-	1													1
GGC	-	-	2													2
CACGC	1															1
GCGCG	2															2
GGCGC	1															1
GGGCG	1															1
TTAAC															1	1
CAGCCG	1															1
CAGGAA						1										1
CGACTT	1															1
GCGCCA	1															1
TGGGAG	1															1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	3												3
ACC/GGT	-	-	1													1
ACG/CGT	-	-		1												1
AGC/CTG	-	-	1													1
CCG/CGG	-	-	7													7
AACTT/AAGTT															1	1
ACGCC/CGTGG	1															1
CCCCG/CGGGG	1															1
CCGCG/CGCGG	3															3
AACAGG/CCTGTT						1										1
AAGTCG/ACTTCG	1															1
ACTCCC/AGTGGG	1															1
AGCCGC/CGGCTG	1															1
AGCGCC/CGCTGG	1															1
