Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_060434925.1/fasta/hub_GCF_060434925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4730987
Total number of identified SSRs:                 26
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4		1	5
GC	-	-	-	2			2
CGC	-	-		1			1
CGG	-	-	1	1			2
GCA	-	-	1				1
GCC	-	-	1				1
GCG	-	-	2				2
GCT	-	-	1				1
CGCGC	1						1
GCGCA	1						1
GCGCC	1						1
GCGCG	1						1
ACCATC			1				1
CAGGAA					1		1
CTCCGC	1						1
CTGGCG	1						1
GAAGTC	1						1
GCCAGC	1						1
TGGTCG				1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	6		1	7
AGC/CTG	-	-	2				2
CCG/CGG	-	-	4	2			6
AGCGC/CGCTG	1						1
CCGCG/CGCGG	3						3
AACAGG/CCTGTT					1		1
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT				1			1
ACCATC/ATGGTG			1				1
AGCGCC/CGCTGG	2						2
AGGCGG/CCGCCT	1						1
