Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-139/megassr/results/hub_GCF_060434885.1/fasta/hub_GCF_060434885.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           4611680
Total number of identified SSRs:                 24
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	8
5	4
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	4	1		5
GC	-	-	-	2			2
CGG	-	-	2	1			3
GCA	-	-				1	1
GCC	-	-	1				1
GCG	-	-	2				2
GCT	-	-	1				1
CGCCG	1						1
CGCGC	1						1
GCGCA	1						1
GCGCG	1						1
CTGGCG	1						1
GAAGTC	1						1
GCCAGC	1						1
GCTCCG		1					1
TGGTCG					1		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	6	1		7
AGC/CTG	-	-	1			1	2
CCG/CGG	-	-	5	1			6
AGCGC/CGCTG	1						1
CCGCG/CGCGG	3						3
AAGTCG/ACTTCG	1						1
ACCACG/CGTGGT					1		1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	2						2
