Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCF_060433825.1/fasta/hub_GCF_060433825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4777774
Total number of identified SSRs:                 21
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	4
5	2
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AC	-	-	-	1																	1
AG	-	-	-	1																	1
CG	-	-	-	1																	1
ACC	-	-	1																		1
CAG	-	-	1																		1
GTG	-	-	1																		1
TGG	-	-	1																		1
AAATA	1																				1
TCCAA	1																				1
AAAAAG	1																				1
AAATAA	1																				1
AGAGCC												1									1
AGGCCC	1																				1
CAAAAT	1																				1
CCGTCA				1																	1
GCCAGA																				1	1
GCGTGA	1																				1
TAGATA			1																		1
TCTGTA		1																			1
TGACAA	1																				1
TGTTGC												1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AC/GT	-	-	-	1																	1
AG/CT	-	-	-	1																	1
CG/CG	-	-	-	1																	1
ACC/GGT	-	-	3																		3
AGC/CTG	-	-	1																		1
AAAAT/ATTTT	1																				1
AATCC/ATTGG	1																				1
AAAAAG/CTTTTT	1																				1
AAAAAT/ATTTTT	1																				1
AAAATC/ATTTTG	1																				1
AACAGC/CTGTTG												1									1
AATGAC/ATTGTC	1																				1
ACAGAT/ATCTGT		1																			1
ACCGTC/ACGGTG				1																	1
ACGCTC/AGCGTG	1																				1
AGAGCC/CTCTGG												1								1	2
AGATAT/ATATCT			1																		1
AGGCCC/CCTGGG	1																				1
