Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-150/megassr/results/hub_GCF_060301345.1/fasta/hub_GCF_060301345.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              829
Total size of examined sequences (bp):           6663928
Total number of identified SSRs:                 54
Number of SSR containing sequences:              44
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	3
3	11
5	11
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																											1	1
CG	-	-	-	1																																																																									1
GC	-	-	-	2																																																																									2
CAC	-	-	1																																																																										1
CCG	-	-	4																																																																										4
CGC	-	-	2																																																																										2
GCC	-	-	1																																																																										1
GGC	-	-	1																																																																										1
GTG	-	-	1																																																																										1
TGG	-	-						1																																																																					1
CGCCG	3																																																																												3
CGCGC	2																																																																												2
CGCGG	1																																																																												1
CGGCG	1																																																																												1
GCCTG	1																																																																												1
GCGGC	1																																																																												1
GGCGA	1																																																																												1
GGCGC	1																																																																												1
AAGGCC	1																																																																												1
ACAGCG	1																																																																												1
ACCACG	1																																																																												1
ACCGGC	1																																																																												1
AGCGCC	1																																																																												1
ATGGCC	1																																																																												1
CCAGGG	1																																																																												1
CCGAGG	1																																																																												1
CCTGAC	1																																																																												1
CCTGGG	1																																																																												1
CGCCCT	1																																																																												1
CGCCGA				1																																																																									1
CGCTGG	1																																																																												1
CGGCCC		1																																																																											1
CGGCGC	1																																																																												1
CGGGCT			1																																																																										1
CGTGAT					1																																																																								1
GCCCAG	2																																																																												2
GCCCTG	1																																																																												1
GCCTGC	2																																																																												2
GGCGCT	1																																																																												1
GGCTCG										1																																																																			1
GTTGGC	1																																																																												1
TAGCGC	1																																																																												1
TGGCTG						1																																																																							1
TGTTCC	1																																																																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																											1	1
CG/CG	-	-	-	3																																																																									3
ACC/GGT	-	-	2					1																																																																					3
CCG/CGG	-	-	8																																																																										8
AGGCC/CCTGG	1																																																																												1
AGGCG/CCTCG	1																																																																												1
CCGCG/CGCGG	9																																																																												9
AACAGG/CCTGTT	1																																																																												1
AACGCC/CGTTGG	1																																																																												1
AAGGCC/CCTTGG	1																																																																												1
ACAGCC/CTGTGG						1																																																																							1
ACAGCG/CGCTGT	1																																																																												1
ACCACG/CGTGGT	1																																																																												1
ACCCTG/AGGGTC	1																																																																												1
ACCGGC/CCGGTG	1																																																																												1
ACGATC/ATCGTG					1																																																																								1
ACGCCG/CGGCGT				1																																																																									1
AGCCCG/CGGGCT			1							1																																																																			2
AGCGCC/CGCTGG	3																																																																												3
AGCGCT/AGCGCT	1																																																																												1
AGGCCC/CCTGGG	3																																																																												3
AGGCCG/CCTCGG	1																																																																												1
AGGCGC/CCTGCG	2																																																																												2
AGGGCC/CCCTGG	2																																																																												2
AGGGCG/CCCTCG	1																																																																												1
ATGGCC/ATGGCC	1																																																																												1
CCCCGG/CCGGGG		1																																																																											1
CCGGCG/CCGGCG	1																																																																												1
