Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_060301325.1/fasta/hub_GCF_060301325.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              682
Total size of examined sequences (bp):           6667956
Total number of identified SSRs:                 49
Number of SSR containing sequences:              43
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	9
5	14
6	24

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1	1
GC	-	-	-	1																				1
AAC	-	-		1																				1
CAC	-	-			1																			1
CCG	-	-	2																					2
CGC	-	-	1																					1
GCC	-	-	1																					1
GCG	-	-	1																					1
GGT	-	-	1																					1
GTG	-	-	1																					1
CCAGG	1																							1
CCTGC	1																							1
CGCCG	3																							3
CGGCG	1																							1
GCCGC	1																							1
GCGCC		1																						1
GCGCG	1																							1
GCGGC	1																							1
GGAAG		1																						1
GGCCT	1																							1
GGCGA	1																							1
GGCGC	1																							1
ACAGCC										1														1
ACAGCG	1																							1
AGCCAC										1														1
CAACGC						1																		1
CAGGAA	1																							1
CAGGCG	2																							2
CCAGCG	1																							1
CCGAGC				1																				1
CCTCGG	1																							1
CGCCAG	1																							1
CGTCGG		1																						1
CGTGAT							1																	1
GCAGGC	2																							2
GCCACC	1																							1
GCCCTG	1																							1
GCGCTG	1																							1
GGCCAT	1																							1
GGCCCA	1																							1
GGCCTT	1																							1
GGCGCG	1																							1
GGCTCG								1																1
GTCAGG	1																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1	1
CG/CG	-	-	-	1																				1
AAC/GTT	-	-		1																				1
ACC/GGT	-	-	2		1																			3
CCG/CGG	-	-	5																					5
AAGGG/CCCTT		1																						1
AGGCC/CCTGG	2																							2
AGGCG/CCTCG	1																							1
AGGGC/CCCTG	1																							1
CCGCG/CGCGG	8	1																						9
AACAGG/CCTGTT	1																							1
AACGCC/CGTTGG						1																		1
AAGGCC/CCTTGG	1																							1
ACAGCC/CTGTGG										2														2
ACAGCG/CGCTGT	1																							1
ACCCTG/AGGGTC	1																							1
ACCGCC/CGGTGG	1																							1
ACGATC/ATCGTG							1																	1
ACGCCG/CGGCGT		1																						1
AGCCCG/CGGGCT				1				1																2
AGCGCC/CGCTGG	3																							3
AGGCCC/CCTGGG	1																							1
AGGCCG/CCTCGG	1																							1
AGGCGC/CCTGCG	4																							4
AGGGCC/CCCTGG	1																							1
ATGGCC/ATGGCC	1																							1
CCCGCG/CGCGGG	1																							1
